CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:958..1617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_YERPG (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      + L++   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVIADVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL-----GMTEGFDVGLEMSGAPPAFRSLLNSMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHRFPID--EFQQGFD-AMRSGKSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_YERPE (L-threonine 3-dehydrogenase OS=Yersinia pestis GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      + L++   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVIADVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL-----GMTEGFDVGLEMSGAPPAFRSLLNSMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHRFPID--EFQQGFD-AMRSGKSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_YERPB (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      + L++   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL-----GMTEGFDVGLEMSGAPPAFRSLLNSMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHRFPID--EFQQGFD-AMRSGKSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_YERPA (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      + L++   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVIADVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL-----GMTEGFDVGLEMSGAPPAFRSLLNSMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHRFPID--EFQQGFD-AMRSGKSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_YERP3 (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+G    V VS  NL D+  E+      M  G DV  + +G      + L++   GG++ ++G+   +M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ +
Sbjct:  187 GARHVVITDVNEYRLDLARKMGVTRAVNVSKENLNDVMTEL-----GMTEGFDVGLEMSGAPPAFRSLLNSMNHGGRIAMLGIPPSDMSIDWNQVIFKGLFIKGIYGREMFETWYKMAALIQSG-LDLTPIITHRFPID--EFQQGFD-AMRSGKSGKVVLS 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHEWM (L-threonine 3-dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 47/162 (29.01%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV++YRL +A+K+GA   V V+  +L+D+  E+      M  G DV  + +G      + L     GGKV ++G+   +M +  +    + + + G++  +   TW      ++SG +D+ P+ITH   +   E ++ F+ + R G + KV+ N
Sbjct:  187 GARHVVITDVNEYRLELAQKMGATRAVNVAKEDLKDVMSEL-----GMTEGFDVGLEMSGVPSAFHSMLDTMNHGGKVAMLGIPGGDMAIDWSKVIFKGLIIKGIYGREMFETWYKMASLIQSG-LDISPIITHH--YKVDEFQQGFD-AMRSGQSGKVILN 339          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_SHESW (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 44/153 (28.76%), Postives = 78/153 (50.98%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 456
            GA  +VI DV++YRL +A+K+GA   V VS  +L+D+ +E+      M  G DV  + +G        L     GGK+ ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH F     + ++ F+    G
Sbjct:  187 GARHVVITDVNEYRLELARKMGATRAVNVSKESLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKIAMLGIPGGEMAIDWSKVIFKGLVIKGIYGREMFETWYKMASLIQSG-LDISPIITHHFKID--DFQQGFDAMGSG 331          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_RHILW (L-threonine 3-dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 44/160 (27.50%), Postives = 81/160 (50.62%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            GA ++VI D++ +RL++A+KLG D++V  S+ NL D+ + +      M  G DV  + +G        +     GGK+ ++G+      +       + +++ G++  +   TW   + F++ G +D+ P+ITHR G    E  + FE    G +   VM
Sbjct:  191 GARKVVITDINPHRLALARKLGIDHVVDASSENLADVMKSI-----GMTEGFDVGLEMSGAAPAFRDMIDKMNNGGKIAILGIAPAGFEIDWNKVIFKMLNLKGIYGREMFETWYKMIAFVQGG-LDLAPIITHRIGID--EFRDGFEAMRSGNSGKVVM 342          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_PYRHO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus horikoshii GN=tdh PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 52/166 (31.33%), Postives = 87/166 (52.41%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA-REVDVVGVF--RYKNTWPLCLEFLRSGKIDVKPLITHRF-GFSQKEVEEAFETSARGGTAIKVMFNL 486
            A GA  +++ +  D+R  +AKK+GAD ++      +D+ +EV  I    G G+DV  + +G  K +   L A    G+V L+G+   ++T+        + + + G+       TW      L+SGK+++ P+ITH++ GF   + EEAFE    G T  KV+F L
Sbjct:  189 ASGAYPVIVSEPSDFRRELAKKVGADYVINPFE--EDVVKEVMDITD--GNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFD--KYEEAFELMRAGKTG-KVVFML 347          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: TDH_PECCP (L-threonine 3-dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 48/162 (29.63%), Postives = 83/162 (51.23%), Query Frame = 1
Query:    7 GAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 483
            GA  +VI DV+ YRL +A+K+GA   V V+   L D+      I+  M  G D+  + +G        L A   GG++ ++G+ H  M++       + + + G++  +   TW      ++SG +D+ P+ITHRF     E ++ F+ + R G + KV+ N
Sbjct:  187 GARNVVITDVNAYRLDLARKMGATRAVNVAEERLADV-----MIELGMTEGFDIGLEMSGAPSAFRAMLKAMNHGGRIAMLGIPHEPMSIDWGEVIFKGLFIKGIYGREMFETWYKMSALIQSG-LDLSPIITHRFHID--EFQKGFD-AMRSGQSGKVILN 339          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
TDH_YERPG1.793e-1229.01L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]
TDH_YERPE1.793e-1229.01L-threonine 3-dehydrogenase OS=Yersinia pestis GN=... [more]
TDH_YERPB1.793e-1229.01L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPA1.793e-1229.01L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]
TDH_YERP31.793e-1229.01L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_SHEWM1.793e-1229.01L-threonine 3-dehydrogenase OS=Shewanella woodyi (... [more]
TDH_SHESW1.793e-1228.76L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_RHILW1.793e-1227.50L-threonine 3-dehydrogenase OS=Rhizobium leguminos... [more]
TDH_PYRHO1.793e-1231.33Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_PECCP1.793e-1229.63L-threonine 3-dehydrogenase OS=Pectobacterium caro... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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