CX300659

Overview
NameCX300659
Unique NameCX300659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_GIBZE (Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVASEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 122          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2BL1_PSAMI (Late histone H2B.2.1 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  YI+KVLKQVHPD GISSKAM IMNSF+ND+FE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYN-KKSTISSREVQTAVRLLLPGELAKHAV 110          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B2_CAEEL (Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYN-KRSTISSREIQTAVRLILPGELAKHAV 109          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1_CAEEL (Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 PE=1 SV=4)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   32 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYN-KRSTISSREIQTAVRLILPGELAKHAV 108          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1A_HUMAN (Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 45/78 (57.69%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  YI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   37 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYS-KRSTISSREIQTAVRLLLPGELAKHAV 113          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2BS2_PSAMI (Histone H2B.2, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.503e-15
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  YI+KVLKQVHPD GISS+ M +MNSF+ND+FE++A EASRL             + +    L  PGELAKHAV
Sbjct:   52 ESYGIYIYKVLKQVHPDTGISSRGMSVMNSFVNDVFERIAGEASRLTSAN-RRSTISSREIQTAVRLLLPGELAKHAV 128          

HSP 2 Score: 22.7126 bits (47), Expect = 1.503e-15
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  450 EGTKAVTKFT 479
            EGTKAVTK+T
Sbjct:  130 EGTKAVTKYT 139          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2BS1_PSAMI (Histone H2B.1, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.508e-15
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  YI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A EA RL       +     + +    L  PGELAKHAV
Sbjct:   47 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIASEAGRLTTYN-RRNTVSSREVQTAVRLLLPGELAKHAV 123          

HSP 2 Score: 22.7126 bits (47), Expect = 1.508e-15
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  450 EGTKAVTKFT 479
            EGTKAVTK+T
Sbjct:  125 EGTKAVTKYT 134          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_ROSNE (Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   45 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 121          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_PODAN (Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 122          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_NEUCR (Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 122          
The following BLAST results are available for this feature:
BLAST of CX300659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
H2B_GIBZE1.339e-1555.13Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3[more]
H2BL1_PSAMI1.339e-1557.69Late histone H2B.2.1 OS=Psammechinus miliaris PE=3... [more]
H2B2_CAEEL1.339e-1555.13Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 P... [more]
H2B1_CAEEL1.339e-1555.13Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 ... [more]
H2B1A_HUMAN1.339e-1557.69Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA ... [more]
H2BS2_PSAMI1.503e-1553.85Histone H2B.2, sperm OS=Psammechinus miliaris PE=1... [more]
H2BS1_PSAMI1.508e-1553.85Histone H2B.1, sperm OS=Psammechinus miliaris PE=1... [more]
H2B_ROSNE1.748e-1555.13Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV... [more]
H2B_PODAN1.748e-1555.13Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=... [more]
H2B_NEUCR1.748e-1555.13Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionC07012G06SK SaltLeaf1 Citrus clementina cDNA clone C07012G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300659 ID=CX300659; Name=CX300659; organism=Citrus clementina; type=EST; length=665bp
TCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCAC
CAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAG
ACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGCAA
GAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGA
AGAAGAGCATCGAGACGTACAAGAATTACATCTTCAAAGTCCTGAAGCAG
GTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTG
GCAAGGTACAATAAGAAGCCGACGATTACATCTTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTTCCTGGTGAGCTGGCTAAGCACGCTGTTTTTTG
AGGGTACCAAAGCTGTTACTAAGTTTACTTTTTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTCTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAA
ATCTTTGGTGGATTTTAGGGTTTGTTTGGATGTACTAGAATTTGGACCTG
TTCAGGTGATGTGCA
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