CX300659

Overview
NameCX300659
Unique NameCX300659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_NEOFI (Histone H2B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htb1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 125
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_MAGGR (Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 122
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_HOLTU (Histone H2B OS=Holothuria tubulosa PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  YI+KV+KQVHPD GISS+AM IMNSF+NDIFE++A EASRL             + +    L  PGELAKHAV
Sbjct:   33 ESYSIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYN-RKSTITSREVQTAVRLLLPGELAKHAV 109
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_EMENI (Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 125
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_COCIM (Histone H2B OS=Coccidioides immitis GN=HTB1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   48 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 124
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_CHAGB (Histone H2B OS=Chaetomium globosum GN=HTB1 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 122
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_ASPTN (Histone H2B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=htb1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 125
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_ASPOR (Histone H2B OS=Aspergillus oryzae GN=htb1 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   50 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 126
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_ASPNC (Histone H2B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=htb1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   50 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 126
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_ASPFU (Histone H2B OS=Aspergillus fumigatus GN=htb1 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETY +YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHAV
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 125
The following BLAST results are available for this feature:
BLAST of CX300659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
H2B_NEOFI1.748e-1555.13Histone H2B OS=Neosartorya fischeri (strain ATCC 1... [more]
H2B_MAGGR1.748e-1555.13Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=... [more]
H2B_HOLTU1.748e-1556.41Histone H2B OS=Holothuria tubulosa PE=3 SV=1[more]
H2B_EMENI1.748e-1555.13Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV... [more]
H2B_COCIM1.748e-1555.13Histone H2B OS=Coccidioides immitis GN=HTB1 PE=3 S... [more]
H2B_CHAGB1.748e-1555.13Histone H2B OS=Chaetomium globosum GN=HTB1 PE=3 SV... [more]
H2B_ASPTN1.748e-1555.13Histone H2B OS=Aspergillus terreus (strain NIH 262... [more]
H2B_ASPOR1.748e-1555.13Histone H2B OS=Aspergillus oryzae GN=htb1 PE=3 SV=... [more]
H2B_ASPNC1.748e-1555.13Histone H2B OS=Aspergillus niger (strain CBS 513.8... [more]
H2B_ASPFU1.748e-1555.13Histone H2B OS=Aspergillus fumigatus GN=htb1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC07012G06SK SaltLeaf1 Citrus clementina cDNA clone C07012G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300659 ID=CX300659; Name=CX300659; organism=Citrus clementina; type=EST; length=665bp
TCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCAC
CAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAG
ACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGCAA
GAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGA
AGAAGAGCATCGAGACGTACAAGAATTACATCTTCAAAGTCCTGAAGCAG
GTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTG
GCAAGGTACAATAAGAAGCCGACGATTACATCTTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTTCCTGGTGAGCTGGCTAAGCACGCTGTTTTTTG
AGGGTACCAAAGCTGTTACTAAGTTTACTTTTTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTCTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAA
ATCTTTGGTGGATTTTAGGGTTTGTTTGGATGTACTAGAATTTGGACCTG
TTCAGGTGATGTGCA
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