CX300659
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B2D_HUMAN (Putative histone H2B type 2-D OS=Homo sapiens GN=HIST2H2BD PE=5 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 2.048e-14 Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 2 Query: 212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRL 349 E+Y Y++KVLK+VHPD GI KAMGIMNSF+NDIFE++A EASRL Sbjct: 36 ESYSIYVYKVLKRVHPDTGIWCKAMGIMNSFLNDIFERIAGEASRL 81 HSP 2 Score: 27.335 bits (59), Expect = 2.048e-14 Identity = 15/31 (48.39%), Postives = 17/31 (54.84%), Query Frame = 3 Query: 348 LARYNKKPTITSSGNSDRCETCTFLVSWLST 440 LA YNK+ TITS + C C SW ST Sbjct: 81 LAHYNKRSTITSRRSRRPC-ACCCPASWPST 110
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1_RAT (Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14 Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 2 Query: 212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445 E+Y Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E RL + + + L PGELAKHAV Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGE-RRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 111
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_EUPCR (Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14 Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 2 Query: 212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445 ET+ YI++VLKQVHP+ G+S K+M IMNSFINDIFEK+A EAS+L + + + + L PGELAKHAV Sbjct: 24 ETFSVYIYRVLKQVHPETGVSKKSMSIMNSFINDIFEKIALEASKLVRYN-KKHTLSSREVQTAVRLLLPGELAKHAV 100
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_PHANO (Histone H2B OS=Phaeosphaeria nodorum GN=HTB1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12 Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 2 Query: 212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFI--NDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445 ETY +YI+KVLKQVHPD GIS++AM I+NSF+ IFE++A EAS+L + + + L PGELAKHAV Sbjct: 47 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVTTTHIFERVATEASKLAAYN-KKSTISSREIQTSVRLILPGELAKHAV 125
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12 Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 2 Query: 212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445 + Y+ Y++KV+KQVHPD+GI+SKAM ++N F+ D+FE++AQEA+RL + + L PGEL++HAV Sbjct: 149 DEYRRYVYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYT-KRRTLSSREIEAAVRLVLPGELSRHAV 225 The following BLAST results are available for this feature:
BLAST of CX300659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 195
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300659 ID=CX300659; Name=CX300659; organism=Citrus clementina; type=EST; length=665bpback to top |