CX300659

Overview
NameCX300659
Unique NameCX300659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300659_ssr18 microsatellite CX300659_ssr18:18..27. BLAST: Citrus ESTs to Prunus persica proteins V1
CX300659_ssr182 microsatellite CX300659_ssr182:182..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10350 contig Ccv1_Contig10350:53..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++L +   +       + +    L  PGELAKHAV
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 137
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++L +   +       + +    L  PGELAKHAV
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 137
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++L +   +       + +    L  PGELAKHAV
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 139
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSI (Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   45 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 123
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYN-KKPTVTSREIQTSVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1_MAIZE (Histone H2B.1 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   60 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 138
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSJ (Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 140
The following BLAST results are available for this feature:
BLAST of CX300659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
H2B2_ORYSJ4.446e-1965.00Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI4.446e-1965.00Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_WHEAT4.446e-1965.00Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]
H2B8_ORYSJ7.584e-1963.75Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B8_ORYSI7.584e-1963.75Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B6_ORYSI7.584e-1963.75Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_WHEAT7.584e-1963.75Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B3_MAIZE7.584e-1963.75Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B1_MAIZE7.584e-1963.75Histone H2B.1 OS=Zea mays PE=2 SV=3[more]
H2B7_ORYSJ9.905e-1963.75Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012G06SK SaltLeaf1 Citrus clementina cDNA clone C07012G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300659 ID=CX300659; Name=CX300659; organism=Citrus clementina; type=EST; length=665bp
TCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCAC
CAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAG
ACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGCAA
GAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGA
AGAAGAGCATCGAGACGTACAAGAATTACATCTTCAAAGTCCTGAAGCAG
GTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTG
GCAAGGTACAATAAGAAGCCGACGATTACATCTTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTTCCTGGTGAGCTGGCTAAGCACGCTGTTTTTTG
AGGGTACCAAAGCTGTTACTAAGTTTACTTTTTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTCTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAA
ATCTTTGGTGGATTTTAGGGTTTGTTTGGATGTACTAGAATTTGGACCTG
TTCAGGTGATGTGCA
back to top