CX300659

Overview
NameCX300659
Unique NameCX300659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300659_ssr18 microsatellite CX300659_ssr18:18..27. BLAST: Citrus ESTs to Prunus persica proteins V1
CX300659_ssr182 microsatellite CX300659_ssr182:182..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10350 contig Ccv1_Contig10350:53..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSI (Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSJ (Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSI (Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B3_WHEAT (Histone H2B.3 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 125
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSJ (Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSI (Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSJ (Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSI (Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 140
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B5_ARATH (Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 2 
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S ETYK Y+FKVLKQVHPDIGIS KAMGIMNSFIND FEK+A E+SRL +   +       + +    L  PGELAKHAV
Sbjct:   35 STETYKIYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 113
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:  209 IETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            +ETYK YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 137
The following BLAST results are available for this feature:
BLAST of CX300659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
H2B7_ORYSI9.905e-1963.75Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B4_ORYSJ9.905e-1963.75Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B4_ORYSI9.905e-1963.75Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_WHEAT9.905e-1963.75Histone H2B.3 OS=Triticum aestivum PE=1 SV=3[more]
H2B3_ORYSJ9.905e-1963.75Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B3_ORYSI9.905e-1963.75Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B10_ORYSJ9.905e-1963.75Histone H2B.10 OS=Oryza sativa subsp. japonica GN=... [more]
H2B10_ORYSI9.905e-1963.75Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B5_ARATH2.882e-1862.50Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480... [more]
H2B2_WHEAT2.882e-1863.29Histone H2B.2 OS=Triticum aestivum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC07012G06SK SaltLeaf1 Citrus clementina cDNA clone C07012G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300659 ID=CX300659; Name=CX300659; organism=Citrus clementina; type=EST; length=665bp
TCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCAC
CAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAG
ACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGCAA
GAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGA
AGAAGAGCATCGAGACGTACAAGAATTACATCTTCAAAGTCCTGAAGCAG
GTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTG
GCAAGGTACAATAAGAAGCCGACGATTACATCTTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTTCCTGGTGAGCTGGCTAAGCACGCTGTTTTTTG
AGGGTACCAAAGCTGTTACTAAGTTTACTTTTTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTCTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAA
ATCTTTGGTGGATTTTAGGGTTTGTTTGGATGTACTAGAATTTGGACCTG
TTCAGGTGATGTGCA
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