CX300659

Overview
NameCX300659
Unique NameCX300659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ++ETYK YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L +   +       + +    L  PGELAKHAV
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYN-KKPTVTSREIQTAVRLVLPGELAKHAV 140          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ++ETYK YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L +   +       + +    L  PGELAKHAV
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYN-KKPTVTSREIQTAVRLVLPGELAKHAV 140          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ++ETYK YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L +   +       + +    L  PGELAKHAV
Sbjct:   65 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYN-KKPTVTSREIQTAVRLVLPGELAKHAV 143          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ++ETYK YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L +   +       + +    L  PGELAKHAV
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYN-KKPTVTSREIQTAVRLVLPGELAKHAV 140          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 8.385e-18
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSKAM I NSFINDIFEKLA E+++L +   +       + +    L  PGELAKHAV
Sbjct:   44 SMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYN-KKPTITSREIQTSVRLVLPGELAKHAV 122          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.430e-17
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETYK YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L +   +       + +    L  PGELAKHAV
Sbjct:   66 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYN-KKPTVTSREIQTAVRLVLPGELAKHAV 142          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.430e-17
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            ETYK YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L +   +       + +    L  PGELAKHAV
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYN-KKPTVTSREIQTAVRLVLPGELAKHAV 144          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  215 TYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            T K YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA EASRL +   +       + +    L  PGE+AKH V
Sbjct:   31 TVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYN-KKSTITPREIQTAVRLLLPGEVAKHKV 106          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1P_MOUSE (Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 5.435e-17
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 112          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1L_HUMAN (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 5.435e-17
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 112          
The following BLAST results are available for this feature:
BLAST of CX300659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
H2B4_CHLRE4.916e-1861.25Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE4.916e-1861.25Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE4.916e-1861.25Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE4.916e-1861.25Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_WHEAT8.385e-1862.50Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B4_VOLCA1.430e-1762.82Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA1.430e-1762.82Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_PEA1.868e-1764.94Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B1P_MOUSE5.435e-1758.97Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp ... [more]
H2B1L_HUMAN5.435e-1758.97Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ... [more]

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Properties
Property NameValue
Genbank descriptionC07012G06SK SaltLeaf1 Citrus clementina cDNA clone C07012G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300659 ID=CX300659; Name=CX300659; organism=Citrus clementina; type=EST; length=665bp
TCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCAC
CAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAG
ACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGCAA
GAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGA
AGAAGAGCATCGAGACGTACAAGAATTACATCTTCAAAGTCCTGAAGCAG
GTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTG
GCAAGGTACAATAAGAAGCCGACGATTACATCTTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTTCCTGGTGAGCTGGCTAAGCACGCTGTTTTTTG
AGGGTACCAAAGCTGTTACTAAGTTTACTTTTTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTCTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAA
ATCTTTGGTGGATTTTAGGGTTTGTTTGGATGTACTAGAATTTGGACCTG
TTCAGGTGATGTGCA
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