CX300659

Overview
NameCX300659
Unique NameCX300659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300659_ssr18 microsatellite CX300659_ssr18:18..27. BLAST: Citrus ESTs to Prunus persica proteins V1
CX300659_ssr182 microsatellite CX300659_ssr182:182..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10350 contig Ccv1_Contig10350:53..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B3_DANRE (Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   36 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 112
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1_DANRE (Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 110
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2BFS_HUMAN (Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.581e-16
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLPHYN-KRSTITSREIQTAVRLLLPGELAKHAV 112
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_CHITH (Histone H2B OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  YIFKVLKQVHPD G+SSKAM IMNSF+NDIFE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   35 ESYAIYIFKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 111
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  Y++KV+KQVHPD GISSKAMGIMNSF+NDIFE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   36 ESYAIYVYKVMKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 112
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_SALTR (Histone H2B OS=Salmo trutta PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRL     +       + +    L  PGELAKHAV
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 110
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_PLADU (Histone H2B OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  YI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   33 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 109
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_ONCMY (Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRL     +       + +    L  PGELAKHAV
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 110
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            E+Y  YI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRL     +       + +    L  PGELAKHAV
Sbjct:   26 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYN-KRSTITSREIQTAVRLLLPGELAKHAV 102
[Close]
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_AGABI (Histone H2B OS=Agaricus bisporus GN=htbA PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 2 
Query:  212 ETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAVF*GYQS 463
            ETY +YI+KVLKQVHPD GIS+KAM I+NSF+NDIFE++A EAS+L     +       + +    L  PGELAKHA+  G +S
Sbjct:   52 ETYSSYIYKVLKQVHPDTGISNKAMAILNSFVNDIFERIATEASKLASYS-KKSTISSREIQTSVRLILPGELAKHAISEGTKS 134
The following BLAST results are available for this feature:
BLAST of CX300659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
H2B3_DANRE1.211e-1658.97Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3[more]
H2B1_DANRE1.211e-1658.97Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 ... [more]
H2BFS_HUMAN1.581e-1658.97Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1... [more]
H2B_CHITH2.065e-1658.97Histone H2B OS=Chironomus thummi thummi PE=3 SV=2[more]
H2B12_XENLA2.065e-1657.69Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2[more]
H2B_SALTR2.697e-1657.69Histone H2B OS=Salmo trutta PE=1 SV=2[more]
H2B_PLADU2.697e-1658.97Histone H2B OS=Platynereis dumerilii PE=3 SV=2[more]
H2B_ONCMY2.697e-1657.69Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2B_LITVA2.697e-1658.97Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]
H2B_AGABI2.697e-1653.57Histone H2B OS=Agaricus bisporus GN=htbA PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC07012G06SK SaltLeaf1 Citrus clementina cDNA clone C07012G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300659 ID=CX300659; Name=CX300659; organism=Citrus clementina; type=EST; length=665bp
TCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCAC
CAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAG
ACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGCAA
GAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGA
AGAAGAGCATCGAGACGTACAAGAATTACATCTTCAAAGTCCTGAAGCAG
GTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTG
GCAAGGTACAATAAGAAGCCGACGATTACATCTTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTTCCTGGTGAGCTGGCTAAGCACGCTGTTTTTTG
AGGGTACCAAAGCTGTTACTAAGTTTACTTTTTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTCTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAA
ATCTTTGGTGGATTTTAGGGTTTGTTTGGATGTACTAGAATTTGGACCTG
TTCAGGTGATGTGCA
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