CX300666 | Citrus Genome Database

Overview


Name	CX300666
Unique Name	CX300666
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	517

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10000	contig	Ccv1_Contig10000:300..815.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.701e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1

Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.5741 bits (205), Expect = 5.983e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3

Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.790e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1

Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3

Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.950e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1

Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.5741 bits (205), Expect = 5.983e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3

Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3

Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3

Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3

Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3

Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3

Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.103e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1

Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.5741 bits (205), Expect = 5.983e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 3

Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.440e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1

Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3

Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX300666 vs. ExPASy Swiss-Prot

BLAST of CX300666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_ARATH	1.701e-34	100.00	Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=...	[more]
UBIQ_COPCO	3.790e-34	98.63	Ubiquitin OS=Coprinus congregatus PE=1 SV=1	[more]
UBIQ_CHLRE	4.950e-34	98.63	Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=...	[more]
UBIQ_YEAST	8.444e-34	97.26	Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1...	[more]
UBIQ_SCHPO	8.444e-34	97.26	Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=...	[more]
UBIQ_KLULA	8.444e-34	97.26	Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=...	[more]
UBIQ_CRYNE	8.444e-34	97.26	Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ...	[more]
UBIQ_CANAL	8.444e-34	97.26	Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1	[more]
UBL1_ORYSJ	1.103e-33	97.26	Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja...	[more]
UBIQ_NEUCR	1.440e-33	97.26	Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C07012H05SK SaltLeaf1 Citrus clementina cDNA clone C07012H05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300666 ID=CX300666; Name=CX300666; organism=Citrus clementina; type=EST; length=517bp
TTCCACCGGATCAGCAGCGTTTGATCTTCGCTGGCAAACAGCTTGAGGAT
GGAAGGACTCTTGCGGATTATAACATCCAGAAGGAGTCGACCCTTCATCT
GGTTCTGCGCCTGAGGGGTGGTATGCAGATACTTTGTCAAGACCTTGACT
GGGAAGACTATTACTCTGGAGGTGGAGAGCTCAGATACTATTGATAATGT
TAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGC
TCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTAGCTGATTAT
AACATTCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGCCTTCGTGGTGG
TGAATTCTAAGAATGTTATCTGCTTGCCGCCGTGTCTGTTCTGCTCTGCT
GTAGCAGTAATATTTATTTTTCATTTGTTAGTCTTGCTTCTGTTTCAGTC
TTTTTGTCACATCAAGTTTTATGTGGTAATGAATAAAAATTAGTTTAAAT
AAAAAAAAAAAAAAAAA