CX300666

Overview
NameCX300666
Unique NameCX300666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10000 contig Ccv1_Contig10000:300..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.633e-32
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 1
Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 80.8777 bits (198), Expect = 3.878e-15
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 3
Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.490e-30
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 1
Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 78.1814 bits (191), Expect = 2.514e-14
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 3
Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            PPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 4.488e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:  157 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 345
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          

HSP 2 Score: 77.7962 bits (190), Expect = 3.283e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3
Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116
            PPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   26 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.655e-27
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1
Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            FVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    4 FVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          

HSP 2 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 3
Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   37 PVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 4.962e-26
Identity = 55/73 (75.34%), Postives = 65/73 (89.04%), Query Frame = 1
Query:  133 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            F+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    4 FIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          

HSP 2 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 3
Query:    3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 122
            P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   37 PVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.071e-20
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  136 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 354
            VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGQ 77          
BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.398e-20
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  136 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    5 VKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.826e-20
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  136 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.826e-20
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  136 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 351
            VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX300666 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.115e-20
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  136 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 354
            VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG+
Sbjct:    5 VKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGD 77          
The following BLAST results are available for this feature:
BLAST of CX300666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_LEIMA4.633e-3293.15Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA1.490e-3090.41Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE4.488e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP7.655e-2779.45Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC4.962e-2675.34Ubiquitin-like protein OS=Autographa californica n... [more]
RUB2_ORYSJ1.071e-2063.01NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_DESAN1.398e-2065.28NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB1_ORYSJ1.826e-2063.89NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH1.826e-2063.89NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME3.115e-2058.90NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC07012H05SK SaltLeaf1 Citrus clementina cDNA clone C07012H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300666 ID=CX300666; Name=CX300666; organism=Citrus clementina; type=EST; length=517bp
TTCCACCGGATCAGCAGCGTTTGATCTTCGCTGGCAAACAGCTTGAGGAT
GGAAGGACTCTTGCGGATTATAACATCCAGAAGGAGTCGACCCTTCATCT
GGTTCTGCGCCTGAGGGGTGGTATGCAGATACTTTGTCAAGACCTTGACT
GGGAAGACTATTACTCTGGAGGTGGAGAGCTCAGATACTATTGATAATGT
TAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGC
TCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTAGCTGATTAT
AACATTCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGCCTTCGTGGTGG
TGAATTCTAAGAATGTTATCTGCTTGCCGCCGTGTCTGTTCTGCTCTGCT
GTAGCAGTAATATTTATTTTTCATTTGTTAGTCTTGCTTCTGTTTCAGTC
TTTTTGTCACATCAAGTTTTATGTGGTAATGAATAAAAATTAGTTTAAAT
AAAAAAAAAAAAAAAAA
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