CX300670 | Citrus Genome Database

Overview


Name	CX300670
Unique Name	CX300670
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	483

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_SYNP2 (30S ribosomal protein S5 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsE PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.889e-13
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  KVM+RPA+PGTGV AGGAVR VLE AGV+N
Sbjct:   97 GGAKVMMRPAAPGTGVIAGGAVRTVLELAGVKN 129

HSP 2 Score: 42.3578 bits (98), Expect = 1.889e-13
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 214
            ++  L KQLGS++ LNNARATV A+  ++ +  V++ERG+
Sbjct:  127 VKNILAKQLGSSSPLNNARATVDALGNLRSFSSVAQERGV 166

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_CYAP7 (30S ribosomal protein S5 OS=Cyanothece sp. (strain PCC 7424) GN=rpsE PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.889e-13
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGGAVR VLE AGV+N
Sbjct:   97 GGASVIMRPAAPGTGVIAGGAVRTVLELAGVKN 129

HSP 2 Score: 45.8246 bits (107), Expect = 1.889e-13
Identity = 19/42 (45.24%), Postives = 32/42 (76.19%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L KQLGS+N LNNARA + A++ ++ + EV++ER +P+
Sbjct:  127 VKNILAKQLGSDNPLNNARAAINALETLRTFSEVAKERDVPL 168

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_MICAN (30S ribosomal protein S5 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsE PE=3 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 4.141e-13
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  +V++RPA+PGTGV AGGAVR VLE AGV+N
Sbjct:   97 GGAQVIMRPAAPGTGVIAGGAVRTVLELAGVKN 129

HSP 2 Score: 44.2838 bits (103), Expect = 4.141e-13
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 214
            ++  L KQLGS+N LNNARA V A++ ++ + EV+++RG+
Sbjct:  127 VKNILAKQLGSDNPLNNARAAVNALETLRTFSEVAKDRGV 166

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_PROMS (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain AS9601) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 9.021e-13
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  130 GAANVLIRPAAPGTGVIAGGSIRTVLELAGIKN 162

HSP 2 Score: 44.669 bits (104), Expect = 9.021e-13
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+ +++  + VSRERGI +
Sbjct:  160 IKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSVSRERGISL 201

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RR5_RHDSA (30S ribosomal protein S5, chloroplastic OS=Rhodomonas salina GN=rps5 PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 9.087e-13
Identity = 20/33 (60.61%), Postives = 28/33 (84.85%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  KV++RP++PG+GV AGG+VR +LE AGV+N
Sbjct:   97 GAAKVIMRPSAPGSGVIAGGSVRTILELAGVKN 129

HSP 2 Score: 45.4394 bits (106), Expect = 9.087e-13
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 214
            ++  L KQLGSNN LNNARA   A+ K+K + +V+++RGI
Sbjct:  127 VKNILAKQLGSNNPLNNARAATDALLKLKTFSQVAQDRGI 166

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RR5_PORYE (30S ribosomal protein S5, chloroplastic OS=Porphyra yezoensis GN=rps5 PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 1.179e-12
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  KV+LRP++PG+GV AGG+VR VLE +GV+N
Sbjct:   97 GAAKVILRPSAPGSGVIAGGSVRTVLELSGVQN 129

HSP 2 Score: 44.669 bits (104), Expect = 1.179e-12
Identity = 18/42 (42.86%), Postives = 31/42 (73.81%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L KQLGSNN LNNARA +  + +++ + E +++RG+P+
Sbjct:  127 VQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPI 168

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_PROMP (30S ribosomal protein S5 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 2.567e-12
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  130 GAANVLIRPAAPGTGVIAGGSIRTVLELAGIKN 162

HSP 2 Score: 43.1282 bits (100), Expect = 2.567e-12
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+ +++  +  SRERGI +
Sbjct:  160 IKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISL 201

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_PROM9 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 2.567e-12
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  131 GAANVLIRPAAPGTGVIAGGSIRTVLELAGIKN 163

HSP 2 Score: 43.1282 bits (100), Expect = 2.567e-12
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+ +++  +  SRERGI +
Sbjct:  161 IKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISL 202

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_PROM5 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 2.567e-12
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  130 GAANVLIRPAAPGTGVIAGGSIRTVLELAGIKN 162

HSP 2 Score: 43.1282 bits (100), Expect = 2.567e-12
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+ +++  +  SRERGI +
Sbjct:  160 IKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISL 201

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_PROM2 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 2.567e-12
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  130 GAANVLIRPAAPGTGVIAGGSIRTVLELAGIKN 162

HSP 2 Score: 43.1282 bits (100), Expect = 2.567e-12
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+ +++  +  SRERGI +
Sbjct:  160 IKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISL 201

The following BLAST results are available for this feature:

BLAST of CX300670 vs. ExPASy Swiss-Prot

BLAST of CX300670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41


Match Name	E-value	Identity	Description
RS5_SYNP2	1.889e-13	75.76	30S ribosomal protein S5 OS=Synechococcus sp. (str...	[more]
RS5_CYAP7	1.889e-13	69.70	30S ribosomal protein S5 OS=Cyanothece sp. (strain...	[more]
RS5_MICAN	4.141e-13	69.70	30S ribosomal protein S5 OS=Microcystis aeruginosa...	[more]
RS5_PROMS	9.021e-13	60.61	30S ribosomal protein S5 OS=Prochlorococcus marinu...	[more]
RR5_RHDSA	9.087e-13	60.61	30S ribosomal protein S5, chloroplastic OS=Rhodomo...	[more]
RR5_PORYE	1.179e-12	63.64	30S ribosomal protein S5, chloroplastic OS=Porphyr...	[more]
RS5_PROMP	2.567e-12	60.61	30S ribosomal protein S5 OS=Prochlorococcus marinu...	[more]
RS5_PROM9	2.567e-12	60.61	30S ribosomal protein S5 OS=Prochlorococcus marinu...	[more]
RS5_PROM5	2.567e-12	60.61	30S ribosomal protein S5 OS=Prochlorococcus marinu...	[more]
RS5_PROM2	2.567e-12	60.61	30S ribosomal protein S5 OS=Prochlorococcus marinu...	[more]

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Properties


Property Name	Value
Genbank description	C07012H09SK SaltLeaf1 Citrus clementina cDNA clone C07012H09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300670 ID=CX300670; Name=CX300670; organism=Citrus clementina; type=EST; length=483bp
TTGGGGCGGCCTAAGGTGATGCTCAGACCTGCTTCTCCTGGTACTGGAGT
GACTGCTGGAGGTGCTGTTAGACTTGTTCTTGAAACGGCAGGTGTTGAGA
ACTGCTTTGGGGAAGCAACTTGGGAGTAACAATGCCCTCAACAATGCTAG
AGCAACGGTTGTTGCAGTGCAGAAAATGAAGCAGTGGCGTGAAGTTTCTC
GTGAGCGCGGGATCCCAATGGAAGAATTATGGAAGTGATGGCTCTAGAAG
TGGCTTGAGTTCTTTGCCCTGTAGTGTAGATTCTGTAAAATGGTTTATGT
AATGCAACCCCAAATACAAACATCAGACATCTCTCTTGATTTTGTGGCTC
AAGCTGGTCTTCTAGTTTTATCCAATTTGTTTCCAGTTGGTACTACTTTT
AAGTTGCAACTTAAAATTTTCTTTCTAGTCATGATTTTATTTTAATTTAC
TTTTGGTGTTAATCCGTAAAAAAAAAAAAAAAA