CX300670 | Citrus Genome Database

Overview


Name	CX300670
Unique Name	CX300670
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	483

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RR5_PORPU (30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea GN=rps5 PE=3 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 3.354e-12
Identity = 20/33 (60.61%), Postives = 28/33 (84.85%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  +V+LRP++PG+GV AGG+VR VLE +GV+N
Sbjct:   97 GAAQVILRPSAPGSGVIAGGSVRTVLELSGVQN 129

HSP 2 Score: 44.669 bits (104), Expect = 3.354e-12
Identity = 18/42 (42.86%), Postives = 31/42 (73.81%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L KQLGSNN LNNARA +  + +++ + E +++RG+P+
Sbjct:  127 VQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPI 168

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_SYNS9 (30S ribosomal protein S5 OS=Synechococcus sp. (strain CC9902) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 4.323e-12
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  139 GAASVLIRPAAPGTGVIAGGSIRTVLELAGIKN 171

HSP 2 Score: 42.3578 bits (98), Expect = 4.323e-12
Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  169 IKNVLAKRLGSKTPLNNARAAMVALSSLRTHKETAKERGISL 210

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_SYNPW (30S ribosomal protein S5 OS=Synechococcus sp. (strain WH7803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 4.323e-12
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  139 GAASVLIRPAAPGTGVIAGGSIRTVLELAGIKN 171

HSP 2 Score: 42.3578 bits (98), Expect = 4.323e-12
Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  169 IKNVLAKRLGSKTPLNNARAAMVALDSLRTHKETAKERGISL 210

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_SYNP6 (30S ribosomal protein S5 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.350e-12
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  +V++RPA+PGTGV AGGAVR VLE AGV+N
Sbjct:  105 GAAQVLIRPAAPGTGVIAGGAVRTVLELAGVKN 137

HSP 2 Score: 40.0466 bits (92), Expect = 4.350e-12
Identity = 17/42 (40.48%), Postives = 30/42 (71.43%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS + LNNARA + A+  ++ ++EV++ R IP+
Sbjct:  135 VKNVLAKRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPV 176

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_SYNE7 (30S ribosomal protein S5 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsE PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.350e-12
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  +V++RPA+PGTGV AGGAVR VLE AGV+N
Sbjct:  105 GAAQVLIRPAAPGTGVIAGGAVRTVLELAGVKN 137

HSP 2 Score: 40.0466 bits (92), Expect = 4.350e-12
Identity = 17/42 (40.48%), Postives = 30/42 (71.43%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS + LNNARA + A+  ++ ++EV++ R IP+
Sbjct:  135 VKNVLAKRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPV 176

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RR5_CYAPA (30S ribosomal protein S5, cyanelle OS=Cyanophora paradoxa GN=rps5 PE=3 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 4.358e-12
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  +V++RP++ GTGV AGGAVR VLE AGV N
Sbjct:   97 GAARVIMRPSAEGTGVIAGGAVRTVLELAGVRN 129

HSP 2 Score: 44.669 bits (104), Expect = 4.358e-12
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 214
            +R  L KQLGSNN LNNARA + A+ ++K + + +++RG+
Sbjct:  127 VRNILAKQLGSNNPLNNARAAMNALSRLKTFSQFAKDRGV 166

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_PROMM (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.619e-12
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  133 GAANVLIRPAAPGTGVIAGGSIRTVLELAGIKN 165

HSP 2 Score: 41.9726 bits (97), Expect = 5.619e-12
Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  163 IKNVLAKRLGSKTPLNNARAAMVALASLRTHKETAKERGISL 204

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_PROM3 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.619e-12
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  134 GAANVLIRPAAPGTGVIAGGSIRTVLELAGIKN 166

HSP 2 Score: 41.9726 bits (97), Expect = 5.619e-12
Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  164 IKNVLAKRLGSKTPLNNARAAMVALASLRTHKETAKERGISL 205

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_PROM0 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.621e-12
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  130 GAANVLIRPAAPGTGVIAGGSIRTVLELAGIKN 162

HSP 2 Score: 41.9726 bits (97), Expect = 5.621e-12
Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+ +++  +  S+ERGI +
Sbjct:  160 IKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASKERGISL 201

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_SYNSC (30S ribosomal protein S5 OS=Synechococcus sp. (strain CC9605) GN=rpsE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 7.289e-12
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G   V++RPA+PGTGV AGG++R VLE AG++N
Sbjct:  138 GAASVLIRPAAPGTGVIAGGSIRTVLELAGIKN 170

HSP 2 Score: 41.5874 bits (96), Expect = 7.289e-12
Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L K+LGS   LNNARA +VA+  ++  +E ++ERGI +
Sbjct:  168 IKNVLAKRLGSKTPLNNARAAMVALSLLRTHKETAKERGISL 209

The following BLAST results are available for this feature:

BLAST of CX300670 vs. ExPASy Swiss-Prot

BLAST of CX300670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41


Match Name	E-value	Identity	Description
RR5_PORPU	3.354e-12	60.61	30S ribosomal protein S5, chloroplastic OS=Porphyr...	[more]
RS5_SYNS9	4.323e-12	60.61	30S ribosomal protein S5 OS=Synechococcus sp. (str...	[more]
RS5_SYNPW	4.323e-12	60.61	30S ribosomal protein S5 OS=Synechococcus sp. (str...	[more]
RS5_SYNP6	4.350e-12	69.70	30S ribosomal protein S5 OS=Synechococcus sp. (str...	[more]
RS5_SYNE7	4.350e-12	69.70	30S ribosomal protein S5 OS=Synechococcus elongatu...	[more]
RR5_CYAPA	4.358e-12	63.64	30S ribosomal protein S5, cyanelle OS=Cyanophora p...	[more]
RS5_PROMM	5.619e-12	60.61	30S ribosomal protein S5 OS=Prochlorococcus marinu...	[more]
RS5_PROM3	5.619e-12	60.61	30S ribosomal protein S5 OS=Prochlorococcus marinu...	[more]
RS5_PROM0	5.621e-12	60.61	30S ribosomal protein S5 OS=Prochlorococcus marinu...	[more]
RS5_SYNSC	7.289e-12	60.61	30S ribosomal protein S5 OS=Synechococcus sp. (str...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07012H09SK SaltLeaf1 Citrus clementina cDNA clone C07012H09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300670 ID=CX300670; Name=CX300670; organism=Citrus clementina; type=EST; length=483bp
TTGGGGCGGCCTAAGGTGATGCTCAGACCTGCTTCTCCTGGTACTGGAGT
GACTGCTGGAGGTGCTGTTAGACTTGTTCTTGAAACGGCAGGTGTTGAGA
ACTGCTTTGGGGAAGCAACTTGGGAGTAACAATGCCCTCAACAATGCTAG
AGCAACGGTTGTTGCAGTGCAGAAAATGAAGCAGTGGCGTGAAGTTTCTC
GTGAGCGCGGGATCCCAATGGAAGAATTATGGAAGTGATGGCTCTAGAAG
TGGCTTGAGTTCTTTGCCCTGTAGTGTAGATTCTGTAAAATGGTTTATGT
AATGCAACCCCAAATACAAACATCAGACATCTCTCTTGATTTTGTGGCTC
AAGCTGGTCTTCTAGTTTTATCCAATTTGTTTCCAGTTGGTACTACTTTT
AAGTTGCAACTTAAAATTTTCTTTCTAGTCATGATTTTATTTTAATTTAC
TTTTGGTGTTAATCCGTAAAAAAAAAAAAAAAA