CX302536

Overview
NameCX302536
Unique NameCX302536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_PSEF5 (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=betB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 76/181 (41.99%), Postives = 103/181 (56.91%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFD 560
            D+A + A  A FY+ GQ C  G+R +V   +   F  K   R  R  +G+P       GP +     E VL YI  G E  A + CGG+RL +    +G FV PTVF+D  DDM I ++EIFGPV +IL ++  ++VIRRAN T FGLAAG+ TK  + A+ ++  L AG  WIN +   D
Sbjct:  268 DRAADTAMMANFYSSGQVCTNGTRVFVPSHLKAAFEAKIAERVARIRIGNPEDENTNFGPLVSFPHMESVLGYIAKGKEEGARVLCGGERLTDGEFAKGAFVAPTVFTDCTDDMTIVREEIFGPVMAILTYETEEEVIRRANDTDFGLAAGLVTKDLNRAHRVIHQLEAGICWINAWGESD 448          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_CHRSD (Betaine aldehyde dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 74/177 (41.81%), Postives = 103/177 (58.19%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A + A  A FY+ GQ C  G+R +V     + F  K   R  R   GDP    V  GP +  E  EKVL YI  G E  A +  GGD   +    +G +  PTVF+D  D+M + ++EIFGPV S+L F + ++VIRRAN T++GLAAGVF++S + A+ ++  L AG  WIN +
Sbjct:  267 DRAADAAMMANFYSSGQICTNGTRVFVERSAKEAFEAKLVERVARIKAGDPMDPSVNFGPLVSFEHQEKVLSYIALGKEQGARVLAGGDAWNSGEWAKGAWAAPTVFTDCTDEMRVVKEEIFGPVMSVLAFDDEEEVIRRANNTKYGLAAGVFSESLNRAHRVIHQLEAGICWINTW 443          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.122e-32
Identity = 76/177 (42.94%), Postives = 101/177 (57.06%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGNR----GYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A F++ GQ C  G+R +V   + D F  K   R  R  VG P  +    GP +   Q +KVL +I SG    A L  GG RL +     G +V PTVF D +DDM I ++EIFGPV SIL F+  D+VI RAN T +GLAAGV T++   A+  +  L AG  WIN +
Sbjct:  267 DRAADIAVIANFFSSGQVCTNGTRVFVQRSIKDAFTAKVLERVKRIRVGKPTDADTNFGPLVSAAQLDKVLGFIASGKAEGAKLLAGGTRLTDGHFADGQYVAPTVFGDCRDDMKIVREEIFGPVMSILDFESEDEVIARANDTHYGLAAGVVTENLSRAHRTIHRLEAGICWINTW 443          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_PSEAB (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=betB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.913e-32
Identity = 74/177 (41.81%), Postives = 99/177 (55.93%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A F++ GQ C  G+R ++H      F  K   R  R  +GDP       GP +     E VL YI SG    A L CGG+R+ +     G +V PTVF+D  DDM I ++EIFGPV SIL + + D+ IRRAN T +GLAAGV T+    A+  +  L AG  WIN +
Sbjct:  268 DRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGNGAYVAPTVFTDCSDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_PSEA7 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=betB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.913e-32
Identity = 76/178 (42.70%), Postives = 100/178 (56.18%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRL-----GNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A F++ GQ C  G+R ++H      F  K   R  R  +GDP       GP +     E VL YI SG    A L CGG+R+     GN G +V PTVF+D  DDM I ++EIFGPV SIL + + D+ IRRAN T +GLAAGV T+    A+  +  L AG  WIN +
Sbjct:  268 DRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTEGAFGN-GAYVAPTVFTDCSDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_ECO27 (Betaine aldehyde dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.913e-32
Identity = 76/177 (42.94%), Postives = 102/177 (57.63%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLG----NRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D A ++A  A F++ GQ C  G+R +V  +    F +K  AR  R   GD F      GP +     + VLRYI  GIE  A + CGGD L     + G +V PTVF+D  DDM I ++EIFGPV SIL ++  D+VIRRAN T +GLAAG+ T   + A+ ++  L AG  WIN +
Sbjct:  268 DLAADIAMMANFFSSGQVCTNGTRVFVPTKCKAAFEQKVLARVERIRAGDVFDPQTNFGPLVSFPHRDNVLRYIAKGIEEGARVLCGGDVLKGDSFDNGAWVAPTVFTDCSDDMTIVREEIFGPVMSILTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB1_RHIME (Betaine aldehyde dehydrogenase 1 OS=Rhizobium meliloti GN=betB1 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.913e-32
Identity = 71/178 (39.89%), Postives = 102/178 (57.30%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGG---DRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDV 554
            + A+  A    FY+ GQ C  G+R +V  ++ + F+ + K R    ++GDP     + GP +   Q +KV  YI  G    A L  GG   + +   G ++QPTVF+DV D M IA++EIFGPV  +L F +  +VI RAN T FGL+AGVFT     A+ +   L AGT+WIN Y++
Sbjct:  266 ESAIGGAMLGNFYSTGQVCSNGTRVFVQRKIKEPFLARLKERTEAIVIGDPLDEATQLGPMVSAAQRDKVFSYIGKGKAEGARLVTGGGIPNNVSGEGTYIQPTVFADVTDGMTIAREEIFGPVMCVLDFDDEVEVIARANATEFGLSAGVFTADLTRAHRVADRLEAGTLWINTYNL 443          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_PSEE4 (Betaine aldehyde dehydrogenase OS=Pseudomonas entomophila (strain L48) GN=betB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.499e-32
Identity = 75/177 (42.37%), Postives = 100/177 (56.50%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A FY+ GQ C  G+R +V   +   F  K   R  R   G+P       GP +  +  E VL YI  G E  A + CGG+RL      +G FV PTVF+D  DDM I ++EIFGPV SIL ++  ++VIRRAN T +GLAAGV T     A+ ++  L AG  WIN +
Sbjct:  268 DKAADIAMMANFYSSGQVCTNGTRVFVPAAMKAAFEAKIAERVARIRAGNPEDENTNFGPLVSFQHMESVLSYIAKGKEEGARVLCGGERLTAGDFAKGAFVAPTVFTDCTDDMTIVKEEIFGPVMSILSYETEEEVIRRANDTEYGLAAGVCTNDISRAHRIIHKLEAGICWINAW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.499e-32
Identity = 64/174 (36.78%), Postives = 99/174 (56.90%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN--RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINC 545
            DQ VE   F  F+  GQ C A SR  VHE +  EF+++         + DPF+ G   GP I   Q++K++++I +     AT+ CGG R  +  +GYF++PT+ SD+   M I ++E+FGPV  +  F   D+ +  AN T +GLA+ VF+K  +    + + L +G VW+NC
Sbjct:  276 DQVVEWTMFGCFWTNGQICSATSRLLVHESIAAEFIDRLVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGATILCGGSRPEHLKKGYFIEPTIISDISTSMQIWREEVFGPVLCVKTFSSEDEALELANDTEYGLASAVFSKDLERCERVSKLLESGAVWVNC 449          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: AL9A1_RAT (4-trimethylaminobutyraldehyde dehydrogenase OS=Rattus norvegicus GN=Aldh9a1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.499e-32
Identity = 72/179 (40.22%), Postives = 103/179 (57.54%), Query Frame = 3
Query:   36 AVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLG------NRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDV 554
            AV+ A  A F  QGQ CC G+R +V + + D F ++   +  R  +GDP       GP I+    E+VL ++RS  E  AT+ CGG+           GY++ P + ++  DDM   ++EIFGPV SIL F+   +V+ RAN T FGLAAGVFT+    A+ +   L+AGT +IN Y+V
Sbjct:  272 AVKGALLANFLTQGQVCCNGTRVFVQKEIADAFTKEVVRQTQRIKIGDPLLEDTRMGPLINAPHLERVLGFVRSAKEQGATVLCGGEPYAPEDPKLKHGYYMTPCILTNCTDDMTCVKEEIFGPVMSILTFETEAEVLERANDTTFGLAAGVFTRDIQRAHRVAAELQAGTCYINNYNV 450          
The following BLAST results are available for this feature:
BLAST of CX302536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 447
Match NameE-valueIdentityDescription
BETB_PSEF51.122e-3241.99Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_CHRSD1.122e-3241.81Betaine aldehyde dehydrogenase OS=Chromohalobacter... [more]
BETB_BURVG1.122e-3242.94Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]
BETB_PSEAB1.913e-3241.81Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_PSEA71.913e-3242.70Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_ECO271.913e-3242.94Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB1_RHIME1.913e-3239.89Betaine aldehyde dehydrogenase 1 OS=Rhizobium meli... [more]
BETB_PSEE42.499e-3242.37Betaine aldehyde dehydrogenase OS=Pseudomonas ento... [more]
BADH_BETVU2.499e-3236.78Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
AL9A1_RAT2.499e-3240.224-trimethylaminobutyraldehyde dehydrogenase OS=Rat... [more]

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Properties
Property NameValue
Genbank descriptionC07003G06SK NTLeaf1 Citrus clementina cDNA clone C07003G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302536 ID=CX302536; Name=CX302536; organism=Citrus clementina; type=EST; length=561bp
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCAGGCTGTGGAACTTGCA
CACTTTGCTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCG
TACTTATGTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGG
CACGTGCAATGAGGCGTATTGTTGGCGATCCCTTCAAGAGTGGTGTTGAA
CAAGGTCCTTAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAGGTACAT
AAGGTCTGGAATTGAAAGCAATGCAACCCTTGAGTGTGGAGGTGATAGAT
TGGGCAACAGAGGCTACTTTGTTCAGCCAACTGTCTTCTCAGATGTTAAG
GATGACATGTTGATAGCACAGGATGAAATCTTTGGCCCGGTGCAATCCAT
CTTGAAGTTCAAGGAAACTGATGACGTTATAAGAAGAGCAAATAAAACAC
GCTTTGGTCTAGCTGCTGGGGTTTTCACCAAGAGTGCAGACACTGCTAAC
ACCATGATGCGTGCACTGAGAGCTGGGACTGTATGGATTAACTGCTACGA
CGTGTTTGATG
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