CX302536

Overview
NameCX302536
Unique NameCX302536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_YERPE (Betaine aldehyde dehydrogenase OS=Yersinia pestis GN=betB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.620e-31
Identity = 73/177 (41.24%), Postives = 104/177 (58.76%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A FY+ GQ C  G+R +V + +   F +K   R  R  +GDP       GP +  +  + V+RYI SG    ATL  GG  L       G +V PTVF+  +DDM I ++EIFGPV SIL ++  ++VIRRAN T +GLAAGV T+  + A+ ++  L+AG  WIN +
Sbjct:  268 DKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQKIVERVKRIHIGDPSDERTNFGPLVSFQHRDSVMRYIDSGKREGATLLIGGYSLTEGALAHGAYVAPTVFTHCRDDMQIVREEIFGPVMSILSYQSEEEVIRRANDTEYGLAAGVVTQDLNRAHRVIHQLQAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_YERPB (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=betB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.620e-31
Identity = 73/177 (41.24%), Postives = 104/177 (58.76%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A FY+ GQ C  G+R +V + +   F +K   R  R  +GDP       GP +  +  + V+RYI SG    ATL  GG  L       G +V PTVF+  +DDM I ++EIFGPV SIL ++  ++VIRRAN T +GLAAGV T+  + A+ ++  L+AG  WIN +
Sbjct:  268 DKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQKIVERVKRIHIGDPSDERTNFGPLVSFQHRDSVMRYIDSGKREGATLLIGGYSLTEGALAHGAYVAPTVFTHCRDDMQIVREEIFGPVMSILSYQSEEEVIRRANDTEYGLAAGVVTQDLNRAHRVIHQLQAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_YERPA (Betaine aldehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=betB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.620e-31
Identity = 73/177 (41.24%), Postives = 104/177 (58.76%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A FY+ GQ C  G+R +V + +   F +K   R  R  +GDP       GP +  +  + V+RYI SG    ATL  GG  L       G +V PTVF+  +DDM I ++EIFGPV SIL ++  ++VIRRAN T +GLAAGV T+  + A+ ++  L+AG  WIN +
Sbjct:  268 DKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQKIVERVKRIHIGDPSDERTNFGPLVSFQHRDSVMRYIDSGKREGATLLIGGYSLTEGALAHGAYVAPTVFTHCRDDMQIVREEIFGPVMSILSYQSEEEVIRRANDTEYGLAAGVVTQDLNRAHRVIHQLQAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_YERP3 (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=betB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.620e-31
Identity = 73/177 (41.24%), Postives = 104/177 (58.76%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A FY+ GQ C  G+R +V + +   F +K   R  R  +GDP       GP +  +  + V+RYI SG    ATL  GG  L       G +V PTVF+  +DDM I ++EIFGPV SIL ++  ++VIRRAN T +GLAAGV T+  + A+ ++  L+AG  WIN +
Sbjct:  268 DKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQKIVERVKRIHIGDPSDERTNFGPLVSFQHRDSVMRYIDSGKREGATLLIGGYSLTEDALAHGAYVAPTVFTHCRDDMQIVREEIFGPVMSILSYQSEEEVIRRANDTEYGLAAGVVTQDLNRAHRVIHQLQAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_STRM5 (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=betB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.620e-31
Identity = 75/177 (42.37%), Postives = 98/177 (55.37%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A F++ GQ C  G+R +V   +   F      R  R  +GDP  +    GP       E VLRYI SG    A L  GG R        G +V PTVFSD +DDM I ++EIFGPV SIL + + D+V+RRAN T FGLAAGV +K    A+ ++  L AG  WIN +
Sbjct:  268 DRAADIAVMANFFSSGQVCTNGTRVFVPRSMLAAFEAAVVERVKRIRIGDPMAAETNFGPLTSFPHMENVLRYIESGKAEGARLLTGGGRATEGALANGAYVLPTVFSDCRDDMTIVKEEIFGPVMSILAYDDEDEVVRRANDTTFGLAAGVVSKDVSRAHRIIHRLEAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_PSEU5 (Betaine aldehyde dehydrogenase OS=Pseudomonas stutzeri (strain A1501) GN=betB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.620e-31
Identity = 72/177 (40.68%), Postives = 102/177 (57.63%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A F++ GQ C  G+R ++   +   F  K   R  R  +GDP +     GP +     +KVL YI  G  + A + CGG+R+      RG FV PT+FSD  DDM I ++EIFGPV S+L+++  D+ IRRAN T +GLAAGV T     A+ ++  L AG  WIN +
Sbjct:  268 DRAADIAVMANFFSSGQVCTNGTRVFIPAGLKASFEAKLLERVQRVRLGDPQQEATNFGPLVSFAHMDKVLDYIAQGKAAGARILCGGERVTEGEYARGAFVAPTIFSDCSDDMSIVREEIFGPVLSLLEYQGEDEAIRRANDTEYGLAAGVVTPDLARAHRIIHRLEAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_PSEMY (Betaine aldehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.620e-31
Identity = 73/177 (41.24%), Postives = 100/177 (56.50%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A FY+ GQ C  G+R +V   +   F  K   R  R  +GDP       GP +     E VL YI  G    A L  GG R+ +    +G +V PTVF+D +DDM I ++EIFGPV SIL +   ++VIRRAN T +GLAAGV T+  + A+ ++  L AG  WIN +
Sbjct:  268 DRAADIAVMANFYSSGQVCTNGTRVFVPRMLQARFEAKVLERVKRIRLGDPLDDATNFGPLVSYAHMESVLGYIEKGRSEGARLLIGGTRVSDGDYAKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILIYDSEEEVIRRANDTDYGLAAGVVTRDLNRAHRVIHKLEAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_ECO55 (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=betB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.620e-31
Identity = 74/177 (41.81%), Postives = 101/177 (57.06%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGY----FVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D A ++A  A F++ GQ C  G+R +V  +    F +K  AR  R   GD F      GP +     + VLRYI  G E  A + CGGD L   G+    +V PTVF+D  DDM I ++EIFGPV S+L ++  D+VIRRAN T +GLAAG+ T   + A+ ++  L AG  WIN +
Sbjct:  268 DLAADIAMMANFFSSGQVCTNGTRVFVPAKCKAAFEQKILARVERIRAGDVFDPQTNFGPLVSFPHRDNVLRYIAKGKEEGARVLCGGDVLKGDGFDNGAWVAPTVFTDCSDDMTIVREEIFGPVMSLLTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_STRMK (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.115e-31
Identity = 75/177 (42.37%), Postives = 98/177 (55.37%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A F++ GQ C  G+R +V   +   F      R  R  +GDP  +    GP       E VLRYI SG    A L  GG R        G +V PTVFSD +DDM I ++EIFGPV SIL + + D+V+RRAN T FGLAAGV +K    A+ ++  L AG  WIN +
Sbjct:  268 DRAADIAVMANFFSSGQVCTNGTRVFVPRSMLAAFEAAVVERVKRIRIGDPMAAETNFGPLTSFPHMENVLRYIESGKAEGARLLTGGGRATEGALANGAYVLPTVFSDCRDDMTIVKEEIFGPVMSILAYDDEDEVVRRANDTTFGLAAGVVSKDISRAHRIIHRLEAGICWINTW 444          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_ECO7I (Betaine aldehyde dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.115e-31
Identity = 74/177 (41.81%), Postives = 101/177 (57.06%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLG----NRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D A ++A  A F++ GQ C  G+R ++  +    F +K  AR  R   GD F      GP +     + VLRYI  G E  A + CGGD L     + G +V PTVF+D  DDM I ++EIFGPV SIL ++  D+VIRRAN T +GLAAG+ T   + A+ ++  L AG  WIN +
Sbjct:  268 DLAADIAMMANFFSSGQVCTNGTRVFIPTKCKAAFEQKILARVERIRAGDVFDPQTNFGPLVSFPHRDNVLRYIAKGKEEGARVLCGGDVLKGDSFDNGAWVAPTVFTDCSDDMTIVREEIFGPVMSILTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTW 444          
The following BLAST results are available for this feature:
BLAST of CX302536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 447
Match NameE-valueIdentityDescription
BETB_YERPE1.620e-3141.24Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPB1.620e-3141.24Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_YERPA1.620e-3141.24Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERP31.620e-3141.24Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_STRM51.620e-3142.37Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
BETB_PSEU51.620e-3140.68Betaine aldehyde dehydrogenase OS=Pseudomonas stut... [more]
BETB_PSEMY1.620e-3141.24Betaine aldehyde dehydrogenase OS=Pseudomonas mend... [more]
BETB_ECO551.620e-3141.81Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_STRMK2.115e-3142.37Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
BETB_ECO7I2.115e-3141.81Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07003G06SK NTLeaf1 Citrus clementina cDNA clone C07003G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302536 ID=CX302536; Name=CX302536; organism=Citrus clementina; type=EST; length=561bp
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCAGGCTGTGGAACTTGCA
CACTTTGCTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCG
TACTTATGTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGG
CACGTGCAATGAGGCGTATTGTTGGCGATCCCTTCAAGAGTGGTGTTGAA
CAAGGTCCTTAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAGGTACAT
AAGGTCTGGAATTGAAAGCAATGCAACCCTTGAGTGTGGAGGTGATAGAT
TGGGCAACAGAGGCTACTTTGTTCAGCCAACTGTCTTCTCAGATGTTAAG
GATGACATGTTGATAGCACAGGATGAAATCTTTGGCCCGGTGCAATCCAT
CTTGAAGTTCAAGGAAACTGATGACGTTATAAGAAGAGCAAATAAAACAC
GCTTTGGTCTAGCTGCTGGGGTTTTCACCAAGAGTGCAGACACTGCTAAC
ACCATGATGCGTGCACTGAGAGCTGGGACTGTATGGATTAACTGCTACGA
CGTGTTTGATG
back to top