CX302536

Overview
NameCX302536
Unique NameCX302536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9488 contig Ccv1_Contig9488:344..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_VIBVY (Betaine aldehyde dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.280e-36
Identity = 84/177 (47.46%), Postives = 107/177 (60.45%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGY----FVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D AV  A  A FY QG+ C  G+R YV   +YD FVE+ K R  + IVGDP     + G  I     EKVL  I S  ES ATL  GG ++  RG     FV PTVF D +D+M   Q+EIFGPV S+L F + D+VI RAN T++GLAAGVFT++   A+ ++  L+AG  WIN +
Sbjct:  263 DDAVSAAMVANFYTQGEVCTHGTRVYVQRAMYDAFVEQLKERTEKLIVGDPMNMETQIGSLISKSHLEKVLGAISSAKESGATLLTGGFQVTERGLEKGCFVAPTVFVDCRDEMPHVQNEIFGPVMSVLVFDDEDEVIARANNTQYGLAAGVFTQNLSKAHRVIHQLQAGICWINTW 439          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_VIBVU (Betaine aldehyde dehydrogenase OS=Vibrio vulnificus GN=betB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.280e-36
Identity = 84/177 (47.46%), Postives = 107/177 (60.45%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGY----FVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D AV  A  A FY QG+ C  G+R YV   +YD FVE+ K R  + IVGDP     + G  I     EKVL  I S  ES ATL  GG ++  RG     FV PTVF D +D+M   Q+EIFGPV S+L F + D+VI RAN T++GLAAGVFT++   A+ ++  L+AG  WIN +
Sbjct:  263 DDAVSAAMVANFYTQGEVCTHGTRVYVQRAMYDAFVEQLKERTEKLIVGDPMNMETQIGSLISKSHLEKVLGAISSAKESGATLLTGGFQVTERGLEKGCFVAPTVFVDCRDEMPHVQNEIFGPVMSVLVFDDEDEVIARANNTQYGLAAGVFTQNLSKAHRVIHQLQAGICWINTW 439          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_RHILO (Betaine aldehyde dehydrogenase OS=Rhizobium loti GN=betB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.354e-36
Identity = 78/179 (43.58%), Postives = 109/179 (60.89%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLG----NRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDV 554
            + A+  A    FY+ GQ C  G+R +V   ++D FVE+   R  +  +G+P     + GP +   Q EKV+ YI  G +  A L CGG+       + G+FV+PTVF+ V D M IA++EIFGPV S+LKF   D+VI RAN T FGLAAGVFT+    A+ ++  L+AGT WIN Y++
Sbjct:  265 ENAIGGAMLGNFYSTGQICSNGTRVFVQSGIHDRFVERLVERTKKIRIGNPLDPETQMGPLVSKAQHEKVVGYIGIGKQDGAVLACGGNVPSLQGFDGGFFVEPTVFTGVTDTMRIAREEIFGPVMSVLKFDGEDEVIDRANDTEFGLAAGVFTRDLPRAHRVIAELQAGTCWINAYNL 443          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_VIBPA (Betaine aldehyde dehydrogenase OS=Vibrio parahaemolyticus GN=betB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.299e-36
Identity = 80/177 (45.20%), Postives = 104/177 (58.76%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGY----FVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D AV  A  A FY QG+ C  G+R +VHE +YD+FV + K R  + +VGDP     + G  I  E   KVL  I S   S ATL  GG ++ + G     FV PTVF D  D M   Q EIFGPV S+LKF E  +VI RAN T +GLAAGVFT++   A+ ++  ++AG  W+N +
Sbjct:  263 DDAVSAAMVANFYTQGEVCTNGTRVFVHESIYDDFVAQLKTRTEKLVVGDPLDENTQIGALISKEHESKVLSAIESAKASGATLLTGGYKVTDNGLQNGNFVAPTVFIDCDDSMSHVQQEIFGPVMSVLKFSEEAEVIERANDTDYGLAAGVFTQNLSRAHRVIHKIQAGICWVNAW 439          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_VIBHB (Betaine aldehyde dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=betB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.299e-36
Identity = 82/177 (46.33%), Postives = 104/177 (58.76%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGY----FVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D AV  A  A FY QG+ C  G+R +VHE +YDEFV + K R    +VGDP     + G  I  E   KVL  I     S ATL  GG ++   G     FV PTVF D +DDM   Q EIFGPV S+LKF + D+VI RAN T +GLAAGVFT++   A+ ++  ++AG  WIN +
Sbjct:  263 DDAVSAAMVANFYTQGEVCTHGTRVFVHEGIYDEFVVQLKKRTELLVVGDPLDEQTQIGALISKEHESKVLSAIEQAKASKATLLTGGYKVTENGLASGNFVVPTVFIDCEDDMPHVQQEIFGPVMSVLKFSDEDEVIARANNTDYGLAAGVFTQNLSRAHRVIHQIQAGICWINTW 439          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: ALDH6_YEAST (Magnesium-activated aldehyde dehydrogenase, cytosolic OS=Saccharomyces cerevisiae GN=ALD6 PE=1 SV=4)

HSP 1 Score: 149.828 bits (377), Expect = 8.299e-36
Identity = 73/168 (43.45%), Postives = 108/168 (64.29%), Query Frame = 3
Query:   60 LFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRI-VGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFD 560
            +F N GQ C +GSR YV E +YDE +   KA     I VG+PF     QG   + +QF+ ++ YI  G +  A +  GG+++G++GYF++PTVF DV +DM I ++EIFGPV ++ KFK  ++ +  AN + FGL +G+ T+S  T   + + L+AGTVWIN Y+ FD
Sbjct:  298 IFKNAGQICSSGSRIYVQEGIYDELLAAFKAYLETEIKVGNPFDKANFQGAITNRQQFDTIMNYIDIGKKEGAKILTGGEKVGDKGYFIRPTVFYDVNEDMRIVKEEIFGPVVTVAKFKTLEEGVEMANSSEFGLGSGIETESLSTGLKVAKMLKAGTVWINTYNDFD 465          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_RHOS5 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=betB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.084e-35
Identity = 74/175 (42.29%), Postives = 106/175 (60.57%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDV 554
            + A+  A    FY+ GQ C  G+R +V + + + F+ +   RA    +GDP    V+ GP + P Q EKVL YI         L CGG+   + G +VQPTVF+DV D M +A++E+FGPV ++L F+  ++VI RAN T FGLAAGVFT     A+ ++  L+AGT WIN Y++
Sbjct:  265 ESAIGAAMLGNFYSSGQICSNGTRVFVQKGIKEAFLARLAERADAIQMGDPLDPEVQMGPLVSPAQLEKVLSYIEKARAEGGRLVCGGEASVSPGCYVQPTVFADVTDGMTLAREEVFGPVMAVLDFETEEEVIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNL 439          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_AGRT5 (Betaine aldehyde dehydrogenase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=betB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.084e-35
Identity = 79/178 (44.38%), Postives = 104/178 (58.43%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGG---DRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDV 554
            + AV  A    FY+ GQ C  G+R +V ++    F+E  K R    I+GDP       GP +   Q EKVL YI  G    ATL  GG   + +   G +VQPTVF+DV DDM IA++EIFGPV  +L F + D+V+ RAN T FGLA GVFT     A+ ++  L AGT+WIN Y++
Sbjct:  272 ESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAKARFLENLKRRTEAMILGDPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDEDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNL 449          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: FTHFD_XENTR (10-formyltetrahydrofolate dehydrogenase OS=Xenopus tropicalis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.153e-35
Identity = 69/179 (38.55%), Postives = 112/179 (62.57%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFK--ETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFD 560
            D+AV +   ++F+N+G+ C A  R ++ E ++DEFV++      +  +GDP     + GP       +K++ Y ++G++  A L  GG ++   G+F +PT+F+DV D+M IA++E FGP+  I KFK  + D+V++RAN T FGLA+GVFTK    A  +   L+AGTV++N Y+  D
Sbjct:  689 DKAVRMGMSSVFFNKGENCIAAGRLFLEESIHDEFVKRVVGEVKKMKIGDPLDRSTDHGPQNHKAHLDKLIEYCQTGVKEGAKLVYGGKQVERPGFFFEPTIFTDVTDEMFIAKEESFGPIMIISKFKDGDVDEVLKRANNTEFGLASGVFTKDISKALYVSEKLQAGTVFVNTYNKTD 867          
BLAST of CX302536 vs. ExPASy Swiss-Prot
Match: BETB_PSEU2 (Betaine aldehyde dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=betB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.198e-34
Identity = 78/177 (44.07%), Postives = 104/177 (58.76%), Query Frame = 3
Query:   30 DQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGP*IDPEQFEKVLRYIRSGIESNATLECGGDRLG----NRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCY 548
            D+A ++A  A FY+ GQ C  G+R +V   +  EF  K   R  R   G+P    +  GP +  E  E VL YI  G E  A L CGGDRL     ++G FV PTVF+D  D+M I ++EIFGPV SIL +   D+V+RRAN T FGLAAG+ T+  + A+ ++  L AG  WIN +
Sbjct:  268 DRAADIAMMANFYSSGQVCTNGTRVFVPNALKAEFEAKILERVKRIRAGNPEDENINFGPLVSFEHMESVLGYIAKGKEQGARLLCGGDRLTGGVFDKGAFVAPTVFTDCTDEMTIVREEIFGPVMSILGYDTEDEVVRRANDTDFGLAAGIVTRDLNRAHRVIHLLEAGICWINAW 444          
The following BLAST results are available for this feature:
BLAST of CX302536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 447
Match NameE-valueIdentityDescription
BETB_VIBVY1.280e-3647.46Betaine aldehyde dehydrogenase OS=Vibrio vulnificu... [more]
BETB_VIBVU1.280e-3647.46Betaine aldehyde dehydrogenase OS=Vibrio vulnificu... [more]
BETB_RHILO6.354e-3643.58Betaine aldehyde dehydrogenase OS=Rhizobium loti G... [more]
BETB_VIBPA8.299e-3645.20Betaine aldehyde dehydrogenase OS=Vibrio parahaemo... [more]
BETB_VIBHB8.299e-3646.33Betaine aldehyde dehydrogenase OS=Vibrio harveyi (... [more]
ALDH6_YEAST8.299e-3643.45Magnesium-activated aldehyde dehydrogenase, cytoso... [more]
BETB_RHOS51.084e-3542.29Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_AGRT51.084e-3544.38Betaine aldehyde dehydrogenase OS=Agrobacterium tu... [more]
FTHFD_XENTR3.153e-3538.5510-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
BETB_PSEU21.198e-3444.07Betaine aldehyde dehydrogenase OS=Pseudomonas syri... [more]

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Properties
Property NameValue
Genbank descriptionC07003G06SK NTLeaf1 Citrus clementina cDNA clone C07003G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302536 ID=CX302536; Name=CX302536; organism=Citrus clementina; type=EST; length=561bp
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCAGGCTGTGGAACTTGCA
CACTTTGCTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCG
TACTTATGTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGG
CACGTGCAATGAGGCGTATTGTTGGCGATCCCTTCAAGAGTGGTGTTGAA
CAAGGTCCTTAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAGGTACAT
AAGGTCTGGAATTGAAAGCAATGCAACCCTTGAGTGTGGAGGTGATAGAT
TGGGCAACAGAGGCTACTTTGTTCAGCCAACTGTCTTCTCAGATGTTAAG
GATGACATGTTGATAGCACAGGATGAAATCTTTGGCCCGGTGCAATCCAT
CTTGAAGTTCAAGGAAACTGATGACGTTATAAGAAGAGCAAATAAAACAC
GCTTTGGTCTAGCTGCTGGGGTTTTCACCAAGAGTGCAGACACTGCTAAC
ACCATGATGCGTGCACTGAGAGCTGGGACTGTATGGATTAACTGCTACGA
CGTGTTTGATG
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