CX305121 | Citrus Genome Database

Overview


Name	CX305121
Unique Name	CX305121
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	547

Libraries


Library Name	Type
Drought1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX305121_ssr227	microsatellite	CX305121_ssr227:227..238.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_PONAB (60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.856e-41
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 3

Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIK
Sbjct:   37 AKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIK 118

HSP 2 Score: 53.1434 bits (126), Expect = 2.856e-41
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1

Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            NPMRE++++KL LNI VGESGDRLTRAAKV  +
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQ 42

BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_PIG (60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.856e-41
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 3

Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIK
Sbjct:   37 AKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIK 118

HSP 2 Score: 53.1434 bits (126), Expect = 2.856e-41
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1

Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            NPMRE++++KL LNI VGESGDRLTRAAKV  +
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQ 42

BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_MOUSE (60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4)

HSP 1 Score: 135.191 bits (339), Expect = 2.856e-41
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 3

Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIK
Sbjct:   37 AKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIK 118

HSP 2 Score: 53.1434 bits (126), Expect = 2.856e-41
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1

Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            NPMRE++++KL LNI VGESGDRLTRAAKV  +
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQ 42

BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_HUMAN (60S ribosomal protein L11 OS=Homo sapiens GN=RPL11 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.856e-41
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 3

Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIK
Sbjct:   37 AKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIK 118

HSP 2 Score: 53.1434 bits (126), Expect = 2.856e-41
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1

Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            NPMRE++++KL LNI VGESGDRLTRAAKV  +
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQ 42

BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_CHILA (60S ribosomal protein L11 OS=Chinchilla lanigera GN=RPL11 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.856e-41
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 3

Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIK
Sbjct:   37 AKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIK 118

HSP 2 Score: 53.1434 bits (126), Expect = 2.856e-41
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1

Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            NPMRE++++KL LNI VGESGDRLTRAAKV  +
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQ 42

BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_BOVIN (60S ribosomal protein L11 OS=Bos taurus GN=RPL11 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.856e-41
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 3

Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIK
Sbjct:   37 AKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIK 118

HSP 2 Score: 53.1434 bits (126), Expect = 2.856e-41
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1

Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            NPMRE++++KL LNI VGESGDRLTRAAKV  +
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQ 42

BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_ICTPU (60S ribosomal protein L11 OS=Ictalurus punctatus GN=rpl11 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 2.856e-41
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 3

Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSD+G FGFGIQEHIDLGIK
Sbjct:   37 AKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIK 118

HSP 2 Score: 54.6842 bits (130), Expect = 2.856e-41
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1

Query:   94 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            +K  NPMRE++++KL LNI VGESGDRLTRAAKV  +
Sbjct:    6 EKKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQ 42

BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_TOXCA (60S ribosomal protein L11 (Fragment) OS=Toxocara canis GN=RPL11 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.874e-41
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 3

Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FG G+QEHIDLGIK
Sbjct:   44 AKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGLGVQEHIDLGIK 125

HSP 2 Score: 55.0694 bits (131), Expect = 2.874e-41
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1

Query:   91 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            EKK  N MRE+K+QKL LNI VGE GDRLTRAAKV  +
Sbjct:   12 EKKARNVMRELKIQKLCLNICVGEFGDRLTRAAKVLEQ 49

BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_CANGA (60S ribosomal protein L11 OS=Candida glabrata GN=RPL11 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.073e-40
Identity = 66/82 (80.49%), Postives = 73/82 (89.02%), Query Frame = 3

Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            ++VLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGIQEHIDLGIK
Sbjct:   34 SKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRNRNFSTTGNFGFGIQEHIDLGIK 115

HSP 2 Score: 55.4546 bits (132), Expect = 1.073e-40
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1

Query:   97 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            K  N MRE+K++KLVLNISVGESGDRLTRA+KV  +
Sbjct:    4 KTQNVMRELKIEKLVLNISVGESGDRLTRASKVLEQ 39

BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11B_YEAST (60S ribosomal protein L11-B OS=Saccharomyces cerevisiae GN=RPL11B PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 1.821e-40
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 3

Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            ++VLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGI EHIDLGIK
Sbjct:   34 SKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIK 115

HSP 2 Score: 57.7658 bits (138), Expect = 1.821e-40
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1

Query:   97 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            K  NPMR++K++KLVLNISVGESGDRLTRA+KV  +
Sbjct:    4 KAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQ 39

The following BLAST results are available for this feature:

BLAST of CX305121 vs. ExPASy Swiss-Prot

BLAST of CX305121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
RL11_PONAB	2.856e-41	81.71	60S ribosomal protein L11 OS=Pongo abelii GN=RPL11...	[more]
RL11_PIG	2.856e-41	81.71	60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 P...	[more]
RL11_MOUSE	2.856e-41	81.71	60S ribosomal protein L11 OS=Mus musculus GN=Rpl11...	[more]
RL11_HUMAN	2.856e-41	81.71	60S ribosomal protein L11 OS=Homo sapiens GN=RPL11...	[more]
RL11_CHILA	2.856e-41	81.71	60S ribosomal protein L11 OS=Chinchilla lanigera G...	[more]
RL11_BOVIN	2.856e-41	81.71	60S ribosomal protein L11 OS=Bos taurus GN=RPL11 P...	[more]
RL11_ICTPU	2.856e-41	80.49	60S ribosomal protein L11 OS=Ictalurus punctatus G...	[more]
RL11_TOXCA	2.874e-41	79.27	60S ribosomal protein L11 (Fragment) OS=Toxocara c...	[more]
RL11_CANGA	1.073e-40	80.49	60S ribosomal protein L11 OS=Candida glabrata GN=R...	[more]
RL11B_YEAST	1.821e-40	79.27	60S ribosomal protein L11-B OS=Saccharomyces cerev...	[more]

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Properties


Property Name	Value
Genbank description	C18001D01Rv Drought1 Citrus clementina cDNA clone C18001D01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX305121 ID=CX305121; Name=CX305121; organism=Citrus clementina; type=EST; length=547bp
GCGGGGACTCTTACATATTAGGGTTTGTTCCGTCTCCGTCTTCACTGAGC
AGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAAC
TTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATC
TCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTCTTCAA
TGAATACCCTGTTTCTTTCTTTTTATTTTATTTATTTAAATGATTAAAGT
TAAAGCTTTTTATGTGTATTTAGTTAACTTTCATGTTTATTTATACAATG
CGCAGGTGCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCC
AGGTACACTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATG
CTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGAT
TGAAGGTGAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGC
TGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTA