CX305121

Overview
NameCX305121
Unique NameCX305121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305121_ssr227 microsatellite CX305121_ssr227:227..238. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11A_YEAST (60S ribosomal protein L11-A OS=Saccharomyces cerevisiae GN=RPL11A PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.821e-40
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            ++VLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGI EHIDLGIK
Sbjct:   34 SKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIK 115          

HSP 2 Score: 57.7658 bits (138), Expect = 1.821e-40
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1
Query:   97 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            K  NPMR++K++KLVLNISVGESGDRLTRA+KV  +
Sbjct:    4 KAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQ 39          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.160e-39
Identity = 66/82 (80.49%), Postives = 72/82 (87.80%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct:   42 AKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIK 123          

HSP 2 Score: 51.6026 bits (122), Expect = 1.160e-39
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1
Query:   76 TRMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            T+        NPMR++ ++KL LNI VGESGDRLTRAAKV  +
Sbjct:    5 TKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQ 47          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_DICDI (60S ribosomal protein L11 OS=Dictyostelium discoideum GN=rpl11 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.772e-38
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPV+SKARYTVRSF IRRNE+IA +VTVRG+KA ++LE GLKV+E+EL  RNFS  G FGFGIQEHIDLGIK
Sbjct:   60 AKVLEQLTGQTPVYSKARYTVRSFNIRRNEQIAAHVTVRGEKAAEILEKGLKVREFELRARNFSTQGSFGFGIQEHIDLGIK 141          

HSP 2 Score: 48.9062 bits (115), Expect = 2.772e-38
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   91 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            + K  N MR ++++KLVLNI VGESGDRL RAAKV  +
Sbjct:   28 KSKKDNVMRGLRIEKLVLNICVGESGDRLVRAAKVLEQ 65          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_LEICH (60S ribosomal protein L11 OS=Leishmania chagasi GN=RPL11 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.136e-38
Identity = 61/82 (74.39%), Postives = 68/82 (82.93%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            ++VLEQL  QTPV S+AR TVR+FGIRRNEKIA + TVRG KA +LLE GLKVKE+EL   NFSDTG FGFGI EHIDLGIK
Sbjct:   36 SKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIK 117          

HSP 2 Score: 56.9954 bits (136), Expect = 6.136e-38
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            M +E K +NPMREI V+KL +NI VGESGDRLTRA+KV  +
Sbjct:    1 MVAESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQ 41          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_SPOFR (60S ribosomal protein L11 OS=Spodoptera frugiperda GN=RpL11 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.041e-37
Identity = 66/82 (80.49%), Postives = 72/82 (87.80%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct:   52 AKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 133          

HSP 2 Score: 46.595 bits (109), Expect = 1.041e-37
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            N MR + ++KL LNI VGESGDRLTRAAKV  +
Sbjct:   25 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQ 57          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_LEIMA (60S ribosomal protein L11 OS=Leishmania major GN=RPL11 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.357e-37
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            ++VLEQL  QTPV S+AR TVR+FGIRRNEKIA + TVRG KA +LLE GLKVKE+EL   NF+DTG FGFGI EHIDLGIK
Sbjct:   36 SKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIK 117          

HSP 2 Score: 56.9954 bits (136), Expect = 1.357e-37
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            M +E K +NPMREI V+KL +NI VGESGDRLTRA+KV  +
Sbjct:    1 MVAESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQ 41          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_CHLRE (60S ribosomal protein L11 OS=Chlamydomonas reinhardtii GN=RPL11 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.099e-37
Identity = 60/82 (73.17%), Postives = 73/82 (89.02%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+ Q PV+ +AR+TVRSF IRRNEKI+CYVTVRG+KA  L++ GL VKE+EL+R+NFSDTG FGFGIQEHIDLG+K
Sbjct:   26 AKVLEQLTSQVPVYGRARFTVRSFAIRRNEKISCYVTVRGEKAYDLVKRGLAVKEFELIRKNFSDTGNFGFGIQEHIDLGLK 107          

HSP 2 Score: 45.4394 bits (106), Expect = 5.099e-37
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1
Query:  112 MREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            MREI++ KLVLNI+V ESGDRL +AAKV  +
Sbjct:    1 MREIRISKLVLNIAVAESGDRLQKAAKVLEQ 31          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_TETTH (60S ribosomal protein L11 OS=Tetrahymena thermophila GN=RPL11 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.127e-36
Identity = 59/82 (71.95%), Postives = 72/82 (87.80%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VL+ LSGQ PVFS+ARYT+RSFGI+RNEK+A +VT+RGDKA  +L  GLKVKE EL ++NFS+TG FGFGIQEHIDLG+K
Sbjct:   34 AKVLKDLSGQEPVFSRARYTIRSFGIKRNEKMAVHVTIRGDKARDILTRGLKVKEMELRKKNFSNTGNFGFGIQEHIDLGMK 115          

HSP 2 Score: 48.9062 bits (115), Expect = 1.127e-36
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   97 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            K  N MRE+K+ KLV+N  VGESGD+LT+AAKV  +
Sbjct:    4 KKENKMREVKIAKLVINCCVGESGDKLTKAAKVLKD 39          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_ENCCU (60S ribosomal protein L11 OS=Encephalitozoon cuniculi GN=RPL11 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.911e-29
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQ PV SKAR T+R+FGIRRNEKIA +V V G KA +LL + L+VKEYEL    FS+ GCFGFGI+EHIDLG+K
Sbjct:   26 AKVLEQLTGQKPVTSKARMTIRNFGIRRNEKIAVHVNVSGKKAYELLNTALRVKEYELKESCFSNNGCFGFGIEEHIDLGLK 107          

HSP 2 Score: 33.8834 bits (76), Expect = 1.911e-29
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = 1
Query:  112 MREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            MREI ++KL ++I   ESG +L RAAKV  +
Sbjct:    1 MREISIKKLSIHICARESGAKLDRAAKVLEQ 31          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.318e-19
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHI 530
            A+VLE+L+GQ PVF KA+ T+R+FG+R+ E IA  VT+RG+KA+  L+  L    + +   +  + G   FGI+EHI
Sbjct:   52 AEVLEELTGQKPVFRKAKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHI 128          

HSP 2 Score: 40.4318 bits (93), Expect = 1.318e-19
Identity = 17/33 (51.52%), Postives = 26/33 (78.79%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            +PMR  ++ K+ +NIS+G+SG+RL RAA+V  E
Sbjct:   25 SPMRRPRIVKVTVNISIGQSGERLQRAAEVLEE 57          
The following BLAST results are available for this feature:
BLAST of CX305121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL11A_YEAST1.821e-4079.2760S ribosomal protein L11-A OS=Saccharomyces cerev... [more]
RL11_DROME1.160e-3980.4960S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_DICDI2.772e-3876.8360S ribosomal protein L11 OS=Dictyostelium discoid... [more]
RL11_LEICH6.136e-3874.3960S ribosomal protein L11 OS=Leishmania chagasi GN... [more]
RL11_SPOFR1.041e-3780.4960S ribosomal protein L11 OS=Spodoptera frugiperda... [more]
RL11_LEIMA1.357e-3773.1760S ribosomal protein L11 OS=Leishmania major GN=R... [more]
RL11_CHLRE5.099e-3773.1760S ribosomal protein L11 OS=Chlamydomonas reinhar... [more]
RL11_TETTH1.127e-3671.9560S ribosomal protein L11 OS=Tetrahymena thermophi... [more]
RL11_ENCCU1.911e-2968.2960S ribosomal protein L11 OS=Encephalitozoon cunic... [more]
RL5_AERPE1.318e-1945.4550S ribosomal protein L5P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC18001D01Rv Drought1 Citrus clementina cDNA clone C18001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305121 ID=CX305121; Name=CX305121; organism=Citrus clementina; type=EST; length=547bp
GCGGGGACTCTTACATATTAGGGTTTGTTCCGTCTCCGTCTTCACTGAGC
AGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAAC
TTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATC
TCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTCTTCAA
TGAATACCCTGTTTCTTTCTTTTTATTTTATTTATTTAAATGATTAAAGT
TAAAGCTTTTTATGTGTATTTAGTTAACTTTCATGTTTATTTATACAATG
CGCAGGTGCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCC
AGGTACACTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATG
CTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGAT
TGAAGGTGAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGC
TGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTA
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