CX305121

Overview
NameCX305121
Unique NameCX305121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305121_ssr227 microsatellite CX305121_ssr227:227..238. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_METBU (50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.112e-13
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 3
Query:  306 VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533
            +LE ++GQT V S A+ T+ +F I++ E I C VT+RG+ A   LE+ L + E  L    F   G   FG++EH D
Sbjct:   32 ILETITGQTVVRSYAKRTLPAFTIKKGEPIGCKVTLRGEAAEGFLETSLGIVEKRLNESQFDIFGNVSFGVEEHTD 107          

HSP 2 Score: 35.8094 bits (81), Expect = 1.112e-13
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = 1
Query:  100 LSNPMREIKVQKLVLNISVGESGDRLTRA 186
            +SNPMR  KV+K+V+++ VGESG  L  A
Sbjct:    1 MSNPMRNPKVEKVVVHMGVGESGQHLVDA 29          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_THEAC (50S ribosomal protein L5P OS=Thermoplasma acidophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.112e-13
Identity = 27/78 (34.62%), Postives = 43/78 (55.13%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533
            A+VLE L+G     + A+ ++R F IR+   I   VT+R   AM+ L+    VK+Y++   +F   G   FGI ++ D
Sbjct:   29 AKVLEMLTGHKATNTLAKKSIRDFNIRKRLPIGVKVTLRKKDAMEFLQKAFYVKDYKITDYSFDKHGNAYFGISDYTD 106          

HSP 2 Score: 45.0542 bits (105), Expect = 1.112e-13
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKV 195
            NPM E+ + K+V+NI VG++GDRLT+AAKV
Sbjct:    2 NPMEEVIIDKVVVNIGVGQAGDRLTKAAKV 31          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.445e-13
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 3
Query:  303 QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533
            ++L  ++GQ  V   A+ T+ +F I++NE I C VT+RG +A Q LE+ L + +  L+R  F   G   FGI+EH D
Sbjct:   31 EILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTD 107          

HSP 2 Score: 30.0314 bits (66), Expect = 1.445e-13
Identity = 13/32 (40.62%), Postives = 22/32 (68.75%), Query Frame = 1
Query:  100 LSNPMREIKVQKLVLNISVGESGDRLTRAAKV 195
            +SN MR   V+K+++++ VGESG  L  A ++
Sbjct:    1 MSNVMRTPVVEKVIVHMGVGESGQHLVDAEEI 32          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_SULAC (50S ribosomal protein L5P OS=Sulfolobus acidocaldarius GN=rpl5p PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.109e-13
Identity = 25/76 (32.89%), Postives = 45/76 (59.21%), Query Frame = 3
Query:  303 QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHI 530
            Q++++L+G  PV++K R ++R FG+R+   I    T+R   A++ L+  L    + L + +F + G   FGI EH+
Sbjct:   38 QLVQELTGVKPVYTKGRKSIREFGVRKGAPIGVKATLRRQAAVEFLKKVLPAVNFRLKQSSFDNYGNVSFGIAEHV 113          

HSP 2 Score: 37.3502 bits (85), Expect = 4.109e-13
Identity = 17/38 (44.74%), Postives = 25/38 (65.79%), Query Frame = 1
Query:   91 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            E K  N MR + + K+ +NI VGESG+RL +A ++  E
Sbjct:    5 EAKKENVMRRVVLDKVTVNIGVGESGERLQKAYQLVQE 42          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_CALMQ (50S ribosomal protein L5P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.909e-13
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHI 530
            A+V+ +L+G+TP +  A  +++ FGIRR E I   VT+R ++A+  L   L   ++ L   +F + G   FGI+EHI
Sbjct:   57 AKVMSELTGRTPSYRLAHKSIKDFGIRRGEPIGLLVTLRRNEAVWFLLRALAAVDFTLREESF-NAGNVSFGIREHI 132          

HSP 2 Score: 37.3502 bits (85), Expect = 6.909e-13
Identity = 15/33 (45.45%), Postives = 25/33 (75.76%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            +PMR I +  + +N+ +G+SG+RL +AAKV +E
Sbjct:   30 HPMRRIFIWSVAVNMGIGQSGERLEKAAKVMSE 62          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_PYRAE (50S ribosomal protein L5P OS=Pyrobaculum aerophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.004e-13
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIK 545
            A +L++L+G  P   +A+ +++ FGIR+ E I   VT+R D+A+  L   L+     + + +F D G   FGI+EHI L G+K
Sbjct:   40 AGLLKELTGAEPSRRRAKKSIKDFGIRKGEPIGVAVTLRRDQAVNFLMRALQAVNNRVKKTSFDDRGNVCFGIKEHILLPGVK 122          

HSP 2 Score: 36.1946 bits (82), Expect = 9.004e-13
Identity = 15/33 (45.45%), Postives = 25/33 (75.76%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            +PM+ I ++K+V+NI VG SG++L +AA +  E
Sbjct:   13 HPMQRIYIEKVVVNIGVGASGEKLEKAAGLLKE 45          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_METLZ (50S ribosomal protein L5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.016e-13
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  291 LYNAQ--VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE--LLRRNFSDTGCFGFGIQEHID 533
            L NA+  + +   G  P+ S AR T+ +FGIR+ + I C  T+RG KAM  LE  LK    E  L  R F  TG FGFGI+EH D
Sbjct:   25 LVNAENIMADLTKGAKPIRSYARNTLPAFGIRKGQPIGCKATLRGKKAMDFLEMALKTYAVENVLHTRQFDATGNFGFGIEEHTD 109          

HSP 2 Score: 25.7942 bits (55), Expect = 9.016e-13
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  127 VQKLVLNISVGESGDRLTRAAKV 195
            V K+V+++ VGE+G+RL  A  +
Sbjct:    9 VAKVVVHMGVGEAGERLVNAENI 31          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_NANEQ (50S ribosomal protein L5P OS=Nanoarchaeum equitans GN=rpl5p PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 9.022e-13
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  303 QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLL-ESGLKVKEYELLRRNFSDTGCFGFGIQEHI 530
            ++L++L+GQ PV +KA+  V  + IR    I   VT+RG+KA ++L E  L   ++++   +F+D G FGFGI E+I
Sbjct:   31 ELLKRLTGQKPVKTKAKVRVEQWHIRPGLPIGVKVTLRGEKAYKILKEKLLPAVDFKIKASSFTDRG-FGFGIPEYI 106          

HSP 2 Score: 39.2762 bits (90), Expect = 9.022e-13
Identity = 15/29 (51.72%), Postives = 25/29 (86.21%), Query Frame = 1
Query:  100 LSNPMREIKVQKLVLNISVGESGDRLTRA 186
            + +PMR+I+++K+ LNI VGESG++L +A
Sbjct:    1 MEHPMRKIRIEKVTLNIGVGESGEKLDKA 29          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_CENSY (50S ribosomal protein L5P OS=Cenarchaeum symbiosum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.522e-12
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 3
Query:  303 QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIK 545
            + L ++SG+ P    A  T R FG+R+ E I   VT+RG+ A  L     + K  ++  R+F D G F FGI EHID+ GIK
Sbjct:   31 RALGEISGKKPCGRDAHETQRDFGVRKGEPIGAAVTIRGEDAGALARRLFEAKGGQVKGRSFDDFGNFSFGIGEHIDIPGIK 112          

HSP 2 Score: 31.187 bits (69), Expect = 1.522e-12
Identity = 13/35 (37.14%), Postives = 24/35 (68.57%), Query Frame = 1
Query:  100 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            ++  MR+I ++K+VLN+ VG+SG+ +  A +   E
Sbjct:    1 MAGDMRKITLEKVVLNMGVGQSGNAVEVAKRALGE 35          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_METST (50S ribosomal protein L5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.567e-12
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  303 QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIK 545
            +++E L  Q PV + ++ T   FGIR+ + IAC VT+RG+KA +++   L   E  +    F   G   FGI+EHID+ G+K
Sbjct:   30 KLIETLVDQKPVRTYSKVTNPEFGIRKKQPIACKVTLRGEKADKIISMVLSGLENRIKASQFDKEGNVSFGIREHIDIPGVK 111          

HSP 2 Score: 31.9574 bits (71), Expect = 2.567e-12
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKV 195
            N M++  + K  +NI VGE G++LTRA K+
Sbjct:    2 NVMQKPFIAKATINIGVGEGGEKLTRAEKL 31          
The following BLAST results are available for this feature:
BLAST of CX305121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL5_METBU1.112e-1340.7950S ribosomal protein L5P OS=Methanococcoides burt... [more]
RL5_THEAC1.112e-1334.6250S ribosomal protein L5P OS=Thermoplasma acidophi... [more]
RL5_METBF1.445e-1340.2650S ribosomal protein L5P OS=Methanosarcina barker... [more]
RL5_SULAC4.109e-1332.8950S ribosomal protein L5P OS=Sulfolobus acidocalda... [more]
RL5_CALMQ6.909e-1337.6650S ribosomal protein L5P OS=Caldivirga maquilinge... [more]
RL5_PYRAE9.004e-1337.3550S ribosomal protein L5P OS=Pyrobaculum aerophilu... [more]
RL5_METLZ9.016e-1345.8850S ribosomal protein L5P OS=Methanocorpusculum la... [more]
RL5_NANEQ9.022e-1340.2650S ribosomal protein L5P OS=Nanoarchaeum equitans... [more]
RL5_CENSY1.522e-1241.4650S ribosomal protein L5P OS=Cenarchaeum symbiosum... [more]
RL5_METST2.567e-1239.0250S ribosomal protein L5P OS=Methanosphaera stadtm... [more]

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Properties
Property NameValue
Genbank descriptionC18001D01Rv Drought1 Citrus clementina cDNA clone C18001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305121 ID=CX305121; Name=CX305121; organism=Citrus clementina; type=EST; length=547bp
GCGGGGACTCTTACATATTAGGGTTTGTTCCGTCTCCGTCTTCACTGAGC
AGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAAC
TTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATC
TCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTCTTCAA
TGAATACCCTGTTTCTTTCTTTTTATTTTATTTATTTAAATGATTAAAGT
TAAAGCTTTTTATGTGTATTTAGTTAACTTTCATGTTTATTTATACAATG
CGCAGGTGCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCC
AGGTACACTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATG
CTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGAT
TGAAGGTGAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGC
TGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTA
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