CX305121

Overview
NameCX305121
Unique NameCX305121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305121_ssr227 microsatellite CX305121_ssr227:227..238. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  291 LYNAQ-VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533
            L NA+ ++ +++G TPV S A+ T+ +FGIR+   I+C VT+RG+ A + LE+ +K+ E ++  R F   G F FGI+EH D
Sbjct:   25 LVNAERIISEITGNTPVRSVAKQTLPAFGIRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTD 106          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_METB6 (50S ribosomal protein L5P OS=Methanoregula boonei (strain 6A8) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 7.307e-12
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 3
Query:  306 VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533
            +++ ++ QTP+ S A+ T  +F IR+   I C VT+RG  A   +++ L +    +    F  +G F FGI+EH D
Sbjct:   28 IMKTITKQTPIRSVAKMTQPAFNIRKGAPIGCKVTLRGKPAEDFIKTSLNIVNKTIFESQFDKSGNFSFGIEEHTD 103          

HSP 2 Score: 31.9574 bits (71), Expect = 7.307e-12
Identity = 11/28 (39.29%), Postives = 22/28 (78.57%), Query Frame = 1
Query:  112 MREIKVQKLVLNISVGESGDRLTRAAKV 195
            MR++ + K+V+++ VGESG++L +A  +
Sbjct:    1 MRDVHIDKVVVHMGVGESGEKLVKAENI 28          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_METMJ (50S ribosomal protein L5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.489e-12
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 3
Query:  306 VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533
            +++Q++GQ PV + A+ T  +FGIR+   I C VT+R + A + + + L + E  L    F  TG   FGI+EH D
Sbjct:   31 LVKQITGQKPVRTIAKRTQPAFGIRKGAPIGCKVTLRRENAEKFITTALDIIERRLAPSQFDRTGNVSFGIEEHTD 106          

HSP 2 Score: 31.187 bits (69), Expect = 9.489e-12
Identity = 12/25 (48.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  112 MREIKVQKLVLNISVGESGDRLTRA 186
            M++I + K+V+++ VGESG+RL +A
Sbjct:    4 MKDIYIDKVVVHMGVGESGERLVKA 28          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_META3 (50S ribosomal protein L5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 5.882e-11
Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 3
Query:  303 QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHID 533
            +V+ +++GQ PV + A+ T  +F IR+   I   +T+RG KA + L+   +       +L   +F   G F FGI EHID
Sbjct:   38 KVVSEITGQKPVRTLAKQTNPAFNIRKKLPIGLKITLRGKKAEEFLKDAFTAFTASGKQLFTYSFDKRGNFSFGIPEHID 117          

HSP 2 Score: 36.1946 bits (82), Expect = 5.882e-11
Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  109 PMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            PM + +++K+ +N+ VGESGD+L  A KV +E
Sbjct:   11 PMSKPRIEKVTVNMGVGESGDKLLTAEKVVSE 42          
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_HALLT (50S ribosomal protein L5P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.925e-11
Identity = 24/77 (31.17%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  303 QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533
            +++E+++ Q  V + ++ T+  FGIR+ + I   VT+RG+ A   L++ L++   ++ +  F DTG   FG+++H D
Sbjct:   37 EIIEEITDQQSVRTTSKRTIAEFGIRKGDPIGVKVTLRGEDAHAFLDTALELA--DISKSQFDDTGNLSFGVEDHTD 111          

HSP 2 Score: 30.8018 bits (68), Expect = 9.925e-11
Identity = 13/41 (31.71%), Postives = 26/41 (63.41%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            M+  +  S+ MRE  ++K+V+++ VG+ G+ L  A ++  E
Sbjct:    1 MSESESASHEMREPYLEKVVVHMGVGQGGEPLADAEEIIEE 41          
The following BLAST results are available for this feature:
BLAST of CX305121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL5_METHJ2.683e-1242.6850S ribosomal protein L5P OS=Methanospirillum hung... [more]
RL5_METB67.307e-1234.2150S ribosomal protein L5P OS=Methanoregula boonei ... [more]
RL5_METMJ9.489e-1238.1650S ribosomal protein L5P OS=Methanoculleus marisn... [more]
RL5_META35.882e-1135.0050S ribosomal protein L5P OS=Methanococcus aeolicu... [more]
RL5_HALLT9.925e-1131.1750S ribosomal protein L5P OS=Halorubrum lacusprofu... [more]

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Properties
Property NameValue
Genbank descriptionC18001D01Rv Drought1 Citrus clementina cDNA clone C18001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305121 ID=CX305121; Name=CX305121; organism=Citrus clementina; type=EST; length=547bp
GCGGGGACTCTTACATATTAGGGTTTGTTCCGTCTCCGTCTTCACTGAGC
AGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAAC
TTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATC
TCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTCTTCAA
TGAATACCCTGTTTCTTTCTTTTTATTTTATTTATTTAAATGATTAAAGT
TAAAGCTTTTTATGTGTATTTAGTTAACTTTCATGTTTATTTATACAATG
CGCAGGTGCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCC
AGGTACACTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATG
CTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGAT
TGAAGGTGAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGC
TGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTA
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