CX305121
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12 Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 3 Query: 291 LYNAQ-VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533 L NA+ ++ +++G TPV S A+ T+ +FGIR+ I+C VT+RG+ A + LE+ +K+ E ++ R F G F FGI+EH D Sbjct: 25 LVNAERIISEITGNTPVRSVAKQTLPAFGIRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTD 106
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_METB6 (50S ribosomal protein L5P OS=Methanoregula boonei (strain 6A8) GN=rpl5p PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 7.307e-12 Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 3 Query: 306 VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533 +++ ++ QTP+ S A+ T +F IR+ I C VT+RG A +++ L + + F +G F FGI+EH D Sbjct: 28 IMKTITKQTPIRSVAKMTQPAFNIRKGAPIGCKVTLRGKPAEDFIKTSLNIVNKTIFESQFDKSGNFSFGIEEHTD 103 HSP 2 Score: 31.9574 bits (71), Expect = 7.307e-12 Identity = 11/28 (39.29%), Postives = 22/28 (78.57%), Query Frame = 1 Query: 112 MREIKVQKLVLNISVGESGDRLTRAAKV 195 MR++ + K+V+++ VGESG++L +A + Sbjct: 1 MRDVHIDKVVVHMGVGESGEKLVKAENI 28
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_METMJ (50S ribosomal protein L5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 9.489e-12 Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 3 Query: 306 VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533 +++Q++GQ PV + A+ T +FGIR+ I C VT+R + A + + + L + E L F TG FGI+EH D Sbjct: 31 LVKQITGQKPVRTIAKRTQPAFGIRKGAPIGCKVTLRRENAEKFITTALDIIERRLAPSQFDRTGNVSFGIEEHTD 106 HSP 2 Score: 31.187 bits (69), Expect = 9.489e-12 Identity = 12/25 (48.00%), Postives = 21/25 (84.00%), Query Frame = 1 Query: 112 MREIKVQKLVLNISVGESGDRLTRA 186 M++I + K+V+++ VGESG+RL +A Sbjct: 4 MKDIYIDKVVVHMGVGESGERLVKA 28
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_META3 (50S ribosomal protein L5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl5p PE=3 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 5.882e-11 Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 3 Query: 303 QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHID 533 +V+ +++GQ PV + A+ T +F IR+ I +T+RG KA + L+ + +L +F G F FGI EHID Sbjct: 38 KVVSEITGQKPVRTLAKQTNPAFNIRKKLPIGLKITLRGKKAEEFLKDAFTAFTASGKQLFTYSFDKRGNFSFGIPEHID 117 HSP 2 Score: 36.1946 bits (82), Expect = 5.882e-11 Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 1 Query: 109 PMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204 PM + +++K+ +N+ VGESGD+L A KV +E Sbjct: 11 PMSKPRIEKVTVNMGVGESGDKLLTAEKVVSE 42
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL5_HALLT (50S ribosomal protein L5P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl5p PE=3 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 9.925e-11 Identity = 24/77 (31.17%), Postives = 48/77 (62.34%), Query Frame = 3 Query: 303 QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID 533 +++E+++ Q V + ++ T+ FGIR+ + I VT+RG+ A L++ L++ ++ + F DTG FG+++H D Sbjct: 37 EIIEEITDQQSVRTTSKRTIAEFGIRKGDPIGVKVTLRGEDAHAFLDTALELA--DISKSQFDDTGNLSFGVEDHTD 111 HSP 2 Score: 30.8018 bits (68), Expect = 9.925e-11 Identity = 13/41 (31.71%), Postives = 26/41 (63.41%), Query Frame = 1 Query: 82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204 M+ + S+ MRE ++K+V+++ VG+ G+ L A ++ E Sbjct: 1 MSESESASHEMREPYLEKVVVHMGVGQGGEPLADAEEIIEE 41 The following BLAST results are available for this feature:
BLAST of CX305121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CX305121 ID=CX305121; Name=CX305121; organism=Citrus clementina; type=EST; length=547bpback to top |