CX305123

Overview
NameCX305123
Unique NameCX305123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length474
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305123_ssr128 microsatellite CX305123_ssr128:128..139. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:197..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.708e-32
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = -3 
Query:  200 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 472
            WDA+KP AWR KYGWTAFC   GP GQA+CG+CLRV N+ T A   VRIVDQC+NGGLDLD  +F ++DT+G GYQQG L V Y+FV+C +
Sbjct:  103 WDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193
[Close]
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.259e-32
Identity = 59/87 (67.82%), Postives = 72/87 (82.76%), Query Frame = -3 
Query:  200 KPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 460
            KP +WR KYGWTAFC   GP G+ +CG+CLRVTN+GTGA  IVRIVDQC+NGGLDLD GVF ++DT+G GYQQG L V+Y+FV+C +
Sbjct:    1 KPYSWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87
The following BLAST results are available for this feature:
BLAST of CX305123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HEVL_ARATH3.708e-3264.84Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
WIN_SOYBN8.259e-3267.82Wound-induced protein (Fragment) OS=Glycine max GN... [more]

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Properties
Property NameValue
Genbank descriptionC18001D04Rv Drought1 Citrus clementina cDNA clone C18001D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305123 ID=CX305123; Name=CX305123; organism=Citrus clementina; type=EST; length=474bp
TTTTTTTTTTTTTTTTTTTTTTTGATAAAAAAAGGAAACTTTTATTACAT
AACTGTAGTGCCCATGAGCACTTCTTGATACTTCATCAGAAGTTTTATTT
TATTTATGAACTAAGTATATAGAGGGATAATTAATTAATAAATTAACCCT
ATTACAGCATTAAGCTTCGATCGATCATGGAATTATAGATGGTGCTTTAA
TCATTGCAGTTCACAAACTCGTAGCTGACAGTAAGGAAGCCTTGTTGATA
GCCTATCCCATTGGTGTCCAATTTCTTGAACACTCCTTCGTCCAAATCTA
AGCCTCCATTGGCACACTGATCAACAATTCTCACAATTTGTTGGGCTCCT
GTACCACTGTTTGTGACCCTTAAGCACCTGCCACAAGCAGCTTGTCCAAT
GGGTCCGCCCGAATGACAGAAAGCAGTCCAGCCATATTTTTGGCGCCAGG
CCAAGGGCTTGTTGGCATCCCATG
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