CX305148

Overview
NameCX305148
Unique NameCX305148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length315
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.327e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = -2 
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            AW DH IFW GPFIGAALAA+YHQ++IRAIPFKS+
Sbjct:  252 AWADHWIFWVGPFIGAALAAIYHQVIIRAIPFKSR 286
[Close]
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.327e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = -2 
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            +WDDH +FW GPFIGAALAALYH +VIRAIPFKS+
Sbjct:  251 SWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKSR 285
The following BLAST results are available for this feature:
BLAST of CX305148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIP11_MAIZE3.327e-1180.00Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP11_ARATH3.327e-1180.00Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]

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Properties
Property NameValue
Genbank descriptionC18001G02Rv Drought1 Citrus clementina cDNA clone C18001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305148 ID=CX305148; Name=CX305148; organism=Citrus clementina; type=EST; length=315bp
TTTTTTTTTTTTTTTTTTTGGACAAGAAACAATAATTTATTTATAATAGG
AATTGGCCATGAACATGTATAGTCATACACAATTCAAGAGCCACAAACAC
CAAGGGTTGTACATATACAGCAGATAATTAAAAGCAAACCCAGTGACAGT
GGGCAATTCAACTCCATACATGGCTATTAATTGAACGGATCGAAATTAAT
GACTAATCATTTGGACTTGAATGGGATGGCCCTGATCACAATCTGATGAT
ATAAAGCTGCAAGCGCTGCTCCAATGAATGGTCCTGCCCAGAAAATTCAA
TGATCATCCCAGGCT
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