CX305174

Overview
NameCX305174
Unique NameCX305174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305174_ssr172 microsatellite CX305174_ssr172:172..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig872 contig Ccv1_Contig872:301..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.502e-25
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKV++E+ R+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLTVT           KAIEISG
Sbjct:   72 VKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.502e-25
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVE+E+ R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K I+ISG
Sbjct:   76 VKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.267e-25
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKV++E+ R+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT           K IEISG
Sbjct:   72 VKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.267e-25
Identity = 56/82 (68.29%), Postives = 69/82 (84.15%), Query Frame = -2
Query:  274 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIS 519
            VKVE+E+ R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K+IEIS
Sbjct:   61 VKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.621e-24
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVEVE+G +L +SGER+KE+E+KNDKWHRVERSSGKF+RRFRL ++AKVE+VKA +ENGVLTVT           KAI+ISG
Sbjct:   69 VKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.118e-24
Identity = 52/64 (81.25%), Postives = 61/64 (95.31%), Query Frame = -2
Query:  328 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 519
            VKVEVE+GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:   70 VKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.162e-24
Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            VKVEVE+G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT
Sbjct:   80 VKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVE+EE  +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVLTVT           K+I+ISG
Sbjct:   71 VKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.897e-23
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = -2
Query:  271 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 492
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.088e-20
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = -2
Query:  325 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 519
            VKVE+E+  +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:   71 VKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CX305174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HSP14_SOYBN2.502e-2569.8817.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA2.502e-2567.4718.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP15_SOYBN4.267e-2568.6717.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_MEDSA4.267e-2568.2918.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16B_WHEAT1.621e-2467.4716.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HSP11_HELAN2.118e-2481.2517.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP11_CHERU6.162e-2476.9218.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17B_ARATH6.812e-2363.8617.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP12_SOYBN8.897e-2374.32Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17A_ARATH1.088e-2072.3117.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC18002B02Rv Drought1 Citrus clementina cDNA clone C18002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305174 ID=CX305174; Name=CX305174; organism=Citrus clementina; type=EST; length=520bp
TTTNTTTTTTTTTTTTTTTTTTTTTATTCGCATTACAAAATATATTTTAT
TGCATCACACTTTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACT
GGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAAC
AGGGGGAAGGGAAGAAAACAAACACACACACACATACAAACACACAAGGG
CTTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAA
ACATTTACAGTTATCACTTAGCCAGAGATCTCAATAGCCTTAACTTCAGG
TTTCTTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCACACCATTCTCCA
TGCTGGCCTTAACCTGTTCCACCTTAGCATTGTCGGGCAACCTGAACCTC
CTCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTT
CTCTTCCTGCTCCTTGCTCCTCTCTCCGCTTATCTGCAGAATCCTGCCCT
CTTCAACCTCAACTTTTACT
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