CX305186

Overview
NameCX305186
Unique NameCX305186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.614e-20
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 2
Query:    8 EGLGLKTDRLKEKTFLEGRMMVG---HYYPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDG 481
            E LGL+   LK   +       G     YP CP+PDL  G+ +HTD G + +L QDDK  GLQ+   E+W+DV P+  ++V+N+GD L++++N +Y SV HR +A +    R+S+A F+NP   D++  P   L+  EK A      Y  +V   + K   G
Sbjct:  134 ENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTD-GTRMSLASFYNPGS-DAVIYPAKTLV--EKEAEESTQVYPKFVFDDYMKLYAG 291          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.256e-19
Identity = 51/130 (39.23%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   83 YPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELI---SPEKPARFRQLTYTDYVTRF 460
            YP CP+P+L  G+ +HTD G L +L QDD+  GLQ+    EWVDV P+  ++VIN+GD +++++N +Y SV HR +A +    R+S+A F+NP   D++  P P L+   + EK   + +  + DY+  +
Sbjct:  163 YPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITNGKYKSVMHRVVAQTD-GNRMSLASFYNPGS-DAVIFPAPALVEKEAEEKKEVYPKFVFEDYMNLY 290          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.797e-19
Identity = 49/127 (38.58%), Postives = 80/127 (62.99%), Query Frame = 2
Query:   83 YPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELI---SPEKPARFRQLTYTDYV 451
            YP CP+PDL  G+ +HTD G + +L QDDK  GLQ+    +W+DV P+  ++V+N+GD L++++N +Y SV HR +  +    R+S+A F+NP   D++  P P L+   + E  A + +  + DY+
Sbjct:  162 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGQWIDVPPMRLSIVVNLGDQLEVITNGKYKSVMHRVITQTD-GTRMSLASFYNPGS-DAVIFPAPTLVEKEAEESKAIYPKFVFDDYM 286          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.771e-19
Identity = 59/148 (39.86%), Postives = 81/148 (54.73%), Query Frame = 2
Query:    5 GEGLGLKTDRLKE-KTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTY 439
            GE LG+  DR    + F +    +M  +YYP C +P  T+G   H DP  LTIL QD  GGL++     W  ++P PGALV+N+GD    +SN  Y S  HRA+ NS+  PR S+A F  P E D++  P  EL+    P  +   T+
Sbjct:  190 GESLGIVGDRRHYFRRFFQRNDSIMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNST-APRRSLAFFLCP-EMDTVVRPPEELVDDHHPRVYPDFTW 335          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.138e-19
Identity = 63/167 (37.72%), Postives = 86/167 (51.50%), Query Frame = 2
Query:    5 GEGLGLKTDRLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTY---TDYVTRFFTKQLDGKTL 490
            GE LG+   R   + F EG   +M  +YYP C +P  T+G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HRA+ NS + PR S+A F  P E D +  P   L+    P  +   T+    D+  + +  + D KTL
Sbjct:  183 GESLGV--GRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKV-PRKSLAFFLCP-EMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHY--RADMKTL 343          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.138e-19
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 2
Query:   80 YYPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSL---YGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGK 484
            +YP CP+ DL  G+ +HTD G + +L QDD+ GGLQ+     W+DV+P+  A+VIN GD ++++SN  Y S  HR LA S    R SIA F+NPS + ++    G   E  +P  PA + +  + DY+  +  ++ + K
Sbjct:  161 HYPPCPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHGNRR-SIASFYNPSLKATIAPAAGAATEEAAP--PALYPKFLFGDYMDVYAKQKYEPK 296          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.063e-18
Identity = 63/167 (37.72%), Postives = 86/167 (51.50%), Query Frame = 2
Query:    5 GEGLGLKTDRLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTY---TDYVTRFFTKQLDGKTL 490
            GE LG+   R   + F EG   +M  +YYP C +P  T+G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HRA+ NS + PR S+A F  P E D +  P   L+    P  +   T+    D+  + +  + D KTL
Sbjct:  183 GESLGV--GRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRV-PRKSLAFFLCP-EMDKVVAPPGTLVDASNPRAYPDFTWRSLLDFTQKHY--RADMKTL 343          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.388e-18
Identity = 63/167 (37.72%), Postives = 86/167 (51.50%), Query Frame = 2
Query:    5 GEGLGLKTDRLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTY---TDYVTRFFTKQLDGKTL 490
            GE LG+   R   + F EG   +M  +YYP C +P  T+G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HRA+ NS + PR S+A F  P E D +  P   L+    P  +   T+    D+  + +  + D KTL
Sbjct:  183 GESLGV--GRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRV-PRKSLAFFLCP-EMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHY--RADMKTL 343          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.813e-18
Identity = 48/93 (51.61%), Postives = 56/93 (60.22%), Query Frame = 2
Query:   83 YPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPS 361
            YP CP+P    G+  HTD   LTIL QD  GGLQ+     W+ VKP P AL+INIGD+ Q  SN  Y SVEHR + N  +E R S A F  PS
Sbjct:  200 YPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVE-RFSTAYFMCPS 291          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.368e-18
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 2
Query:   77 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQI-KHG-EEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 451
            ++YP CP P   +G+ +HTD G  T +LQ    GLQ+ +HG + WV V  VPGA+V+N+GD+ QI++N  + SV HRA+ N   + RIS+  F  P     +  P  E ++   PA +R +T+ +Y+
Sbjct:  212 NWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESD-RISLGYFLGPPAHVKV-APLREALA-GTPAAYRAVTWPEYM 335          
The following BLAST results are available for this feature:
BLAST of CX305186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ACCO1_SOLLC9.614e-2037.041-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO_PERAE1.256e-1939.231-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO_TOBAC2.797e-1938.581-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
GAOX1_ORYSJ4.771e-1939.86Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
GAO1B_WHEAT8.138e-1937.72Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
ACCO_MUSAC8.138e-1938.851-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
GAO1A_WHEAT1.063e-1837.72Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GAO1D_WHEAT1.388e-1837.72Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
G2OX8_ARATH1.813e-1851.61Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
G3O23_WHEAT2.368e-1839.37Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]

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Properties
Property NameValue
Genbank descriptionC18002C02Rv Drought1 Citrus clementina cDNA clone C18002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305186 ID=CX305186; Name=CX305186; organism=Citrus clementina; type=EST; length=599bp
GCGGGGTGAAGGTTTGGGGTTGAAAACCGATAGGTTGAAGGAAAAGACCT
TCCTGGAAGGGAGGATGATGGTGGGCCATTATTATCCCTACTGTCCGCAG
CCTGATCTGACAGTGGGGATCACATCTCATACTGATCCAGGGCCATTGAC
AATCTTGTTGCAAGATGATAAAGGTGGGCTGCAAATTAAGCATGGTGAGG
AATGGGTGGATGTTAAACCAGTTCCAGGAGCTCTGGTTATTAACATTGGG
GATATACTTCAGATTATGTCCAATGATGAATACATAAGTGTAGAGCATAG
AGCATTGGCTAATTCGTCCCTGGAACCACGAATCTCAATTGCTGTTTTCT
TCAATCCAAGCGAGAGGGACAGCCTTTATGGACCATTCCCGGAGCTGATA
TCCCCAGAGAAGCCAGCTCGTTTTCGGCAGCTCACATACACAGACTATGT
AACAAGGTTCTTCACAAAACAGTTAGATGGAAAAACATTGGTGAATTACT
ATAGGCTGTAAGAAACAAAACTTGGTAAATCTGGTTGTTTGTGCCTGTAT
AAACTATTCTTACGTAAGAATAACAATTCAATTGTTCGTCTCATAAAAA
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