CX305191
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3) HSP 1 Score: 112.849 bits (281), Expect = 1.237e-24 Identity = 64/160 (40.00%), Postives = 96/160 (60.00%), Query Frame = 1 Query: 112 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 R K + P P+ K L E L+G+YGLR K+E+W Q + R+ AR LL L E+N R + L+++++R G LE+ + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI HI + + V P +VV + I++ TSP Sbjct: 5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSP 160
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.616e-24 Identity = 59/155 (38.06%), Postives = 93/155 (60.00%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 KT+ +PR+P+E +R+ E+ L+ YGLR KRELW+ + L + R R LL + R E A++ R+ R+G L++ + LD +L+L + + LERRLQT V++ G+A +I AR I HI V Q V +PS++V+ + I++ SP Sbjct: 9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSP 162
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.111e-24 Identity = 60/154 (38.96%), Postives = 93/154 (60.39%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 + ++ P P+ + L+ E L+G+YGLR KRELW Q + + R+ AR LL L R + L+++++R G +E+ LD +L L EN+LERRLQT+V+K G+A++I+ AR LI HI +G + V P ++V + I+F TSP Sbjct: 9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSP 160
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.111e-24 Identity = 66/154 (42.86%), Postives = 92/154 (59.74%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LTVE+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSP Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSP 159
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24 Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 K ++ P P+ KERLD E LV +Y L+ K+ELW+ + L R AR LL K E LL+R+ R G L E + LD VL+LT+++ LERRLQTLVFK G+A++I AR LI HI V Q++ PS++V + + I + SP Sbjct: 9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASP 159
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24 Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 K ++ P P+ KERLD E L +Y L+ K+ELWR + L R AR LL K E + LL+R+HR G L + LD VL+LTVE+ LERRLQTLV+K G+A++I AR LI HI V Q++ P ++V + + I ++ SP Sbjct: 9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSP 159
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.600e-24 Identity = 66/154 (42.86%), Postives = 92/154 (59.74%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 K ++ P P+ KERLD E L+ +Y L+ K+ELWR + L R AR LL K E LL+R++R G L + LD VL+LTVE+ L+RRLQT+VFK G+A++I AR LI HI V Q++ P ++V + + I +S TSP Sbjct: 9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSP 159
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.600e-24 Identity = 65/154 (42.21%), Postives = 92/154 (59.74%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSP Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSP 159
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.600e-24 Identity = 65/154 (42.21%), Postives = 92/154 (59.74%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSP Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSP 159
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 6.141e-24 Identity = 58/154 (37.66%), Postives = 91/154 (59.09%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 K ++ P+ P+ KERL+ E L+G YGLR K+ELW+ + R R+ AR LL L + R L+ ++R G ++ +D VL + E LERRLQT+V+K G+AK+I+ AR L+ HI + + V P ++V + +K I+++ SP Sbjct: 9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSP 160 The following BLAST results are available for this feature:
BLAST of CX305191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CX305191 ID=CX305191; Name=CX305191; organism=Citrus clementina; type=EST; length=586bpback to top |