CX305191

Overview
NameCX305191
Unique NameCX305191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305191_ssr54 microsatellite CX305191_ssr54:54..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig853 contig Ccv1_Contig853:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.237e-24
Identity = 64/160 (40.00%), Postives = 96/160 (60.00%), Query Frame = 1
Query:  112 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            R   K +  P  P+ K  L  E  L+G+YGLR K+E+W  Q  +   R+ AR LL L   E+N R     + L+++++R G LE+  + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI   HI +  + V  P +VV    +  I++  TSP
Sbjct:    5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSP 160          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.616e-24
Identity = 59/155 (38.06%), Postives = 93/155 (60.00%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            KT+ +PR+P+E +R+  E+ L+  YGLR KRELW+ +  L + R   R LL    +   R   E  A++ R+ R+G L++  + LD +L+L + + LERRLQT V++ G+A +I  AR  I   HI V  Q V +PS++V+   +  I++   SP
Sbjct:    9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSP 162          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.111e-24
Identity = 60/154 (38.96%), Postives = 93/154 (60.39%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            + ++ P  P+ +  L+ E  L+G+YGLR KRELW  Q  + + R+ AR LL L      R    + L+++++R G +E+    LD +L L  EN+LERRLQT+V+K G+A++I+ AR LI   HI +G + V  P ++V    +  I+F  TSP
Sbjct:    9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSP 160          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.111e-24
Identity = 66/154 (42.86%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LTVE+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSP
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSP 159          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24
Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            K ++ P  P+ KERLD E  LV +Y L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R G L E  + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SP
Sbjct:    9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASP 159          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24
Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            K ++ P  P+ KERLD E  L  +Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R+HR G L  +   LD VL+LTVE+ LERRLQTLV+K G+A++I  AR LI   HI V  Q++  P ++V  + +  I ++  SP
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSP 159          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.600e-24
Identity = 66/154 (42.86%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELWR +  L   R  AR LL    K      E   LL+R++R G L  +   LD VL+LTVE+ L+RRLQT+VFK G+A++I  AR LI   HI V  Q++  P ++V  + +  I +S TSP
Sbjct:    9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSP 159          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.600e-24
Identity = 65/154 (42.21%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSP
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSP 159          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.600e-24
Identity = 65/154 (42.21%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSP
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSP 159          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.141e-24
Identity = 58/154 (37.66%), Postives = 91/154 (59.09%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            K ++ P+ P+ KERL+ E  L+G YGLR K+ELW+ +    R R+ AR LL L  +  R       L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SP
Sbjct:    9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSP 160          
The following BLAST results are available for this feature:
BLAST of CX305191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_SULAC1.237e-2440.0030S ribosomal protein S4P OS=Sulfolobus acidocalda... [more]
RS4_METTP1.616e-2438.0630S ribosomal protein S4P OS=Methanosaeta thermoph... [more]
RS4_SULTO2.111e-2438.9630S ribosomal protein S4P OS=Sulfolobus tokodaii G... [more]
RS4_PYRHO2.111e-2442.8630S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_THESM2.757e-2442.8630S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_THEGJ2.757e-2442.8630S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_THEON3.600e-2442.8630S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_PYRFU3.600e-2442.2130S ribosomal protein S4P OS=Pyrococcus furiosus G... [more]
RS4_PYRAB3.600e-2442.2130S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]
RS4_AERPE6.141e-2437.6630S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC18002C10Rv Drought1 Citrus clementina cDNA clone C18002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305191 ID=CX305191; Name=CX305191; organism=Citrus clementina; type=EST; length=586bp
GCGGGGAGACACGGCCTCTTTACGCCATTTGCTTAGGCTTTTTCGAAGAT
CGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACA
TTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCC
TATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATGG
GCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGCA
TCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGT
CGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTT
CTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGG
AGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATG
GCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAN
GGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATT
CCCAGAAGCACATTGAATTCTCACTGACAAGTCCAT
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