CX305191

Overview
NameCX305191
Unique NameCX305191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 59/156 (37.82%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTS 582
            K +  P+R +EK R+++E  L   YGLR KRE+WR    L + R+ AR++L +     + P+ I   + L+  + RYG L      +D +L+L VE+ LERRLQT+V++ G+A+S   AR LI   HI +  Q V++PS++V +  +  I +  TS
Sbjct:    9 KQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATS 163          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 57/152 (37.50%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  112 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIE 567
            R + K +++P +P+++  L+   RL G YGLR KRELWR+ +   + R  AR LL   +    ++   E +++++   G L +    LD +L L+VE FLERRLQT+V++ G AKS + AR LI   HI V  + +  PS++V+++ +  IE
Sbjct:    5 RKHRKKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.790e-23
Identity = 56/158 (35.44%), Postives = 95/158 (60.13%), Query Frame = 1
Query:  112 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            R   + ++ P  P+  + L +E +++G+YGLR K+E+W  +  ++  R+ AR LL L      R    + LL ++++ G L+  Q+ +D +L L  E+ LERRLQT+V + G+A++I+ AR LI   HI VG + +  P ++V+ D +  I+F  TSP
Sbjct:    5 RKSRRKWEGPGMPWLSQALKSEQKIMGDYGLRNKKEIWLARTIVTGYRHMARSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSP 160          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.790e-23
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            K+F+ PR P+++ R+ +E++LV  YGLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG ++ S   +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   +P  +V  + + HI +  TSP
Sbjct:    9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  136 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVV 540
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQTLVF+ G+AKSIHHAR L+   H+ V  + V  P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 1
Query:  136 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVV 540
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+   +LD +L+L V   LERRLQT+V++ G+AKSIHHAR LI   H+ V  + V  P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.976e-22
Identity = 67/152 (44.08%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  136 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLR---RMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTS 582
            KP+R +  + L +ELRL+GEYGLR K+ELW  +  L  I++ AR++L+     P  I  GEA  R   R+ R G + +    LD VLAL V   LERRLQTLV++ GMA+SIH AR LI   HI +    V  P ++V  + +  I F+ TS
Sbjct:   15 KPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.401e-22
Identity = 59/145 (40.69%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  136 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHI 564
            KP++ + K+ L  EL+LVGEYGLR K+ELW  +  L  I   AR LL++  +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR L+   H+ V  + V  P F+V  D +  I
Sbjct:   15 KPKKIWNKQLLLEELQLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.748e-22
Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            K ++ P  P+ KERLD E  L   Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R++R G L  +   LD VL+LTVE+ LERRLQT+V++ G+A+++  AR LI   HI V  Q++  P ++V  + +  I ++  SP
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSP 159          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 60/137 (43.80%), Postives = 86/137 (62.77%), Query Frame = 1
Query:  136 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVV 540
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD VL+L V   LERRLQT+V++ G+AKSI+HAR LI   HI V  + V+ P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147          
The following BLAST results are available for this feature:
BLAST of CX305191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_METLZ5.199e-2337.8230S ribosomal protein S4P OS=Methanocorpusculum la... [more]
RS4_KORCO5.199e-2337.5030S ribosomal protein S4P OS=Korarchaeum cryptofil... [more]
RS4_METS56.790e-2335.4430S ribosomal protein S4P OS=Metallosphaera sedula... [more]
RS4_METBF6.790e-2336.8830S ribosomal protein S4P OS=Methanosarcina barker... [more]
RS4_PYRCJ1.158e-2243.8030S ribosomal protein S4P OS=Pyrobaculum calidifon... [more]
RS4_PYRAE1.158e-2243.0730S ribosomal protein S4P OS=Pyrobaculum aerophilu... [more]
RS4_CALMQ1.976e-2244.0830S ribosomal protein S4P OS=Caldivirga maquilinge... [more]
RS4_PYRIL4.401e-2240.6930S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]
RS4_PYRKO5.748e-2240.2630S ribosomal protein S4P OS=Pyrococcus kodakaraen... [more]
RS4_THENV7.507e-2243.8030S ribosomal protein S4P OS=Thermoproteus neutrop... [more]

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Properties
Property NameValue
Genbank descriptionC18002C10Rv Drought1 Citrus clementina cDNA clone C18002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305191 ID=CX305191; Name=CX305191; organism=Citrus clementina; type=EST; length=586bp
GCGGGGAGACACGGCCTCTTTACGCCATTTGCTTAGGCTTTTTCGAAGAT
CGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACA
TTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCC
TATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATGG
GCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGCA
TCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGT
CGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTT
CTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGG
AGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATG
GCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAN
GGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATT
CCCAGAAGCACATTGAATTCTCACTGACAAGTCCAT
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