CX305191

Overview
NameCX305191
Unique NameCX305191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.731e-18
Identity = 51/159 (32.08%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            K +  P  P++K R+D E  LV +YGLR K+ +W+    L + R+ AR LL +       ++   I + + +++++   G L+E   KL+ VLAL V++ +ERRLQT++++ G A SI  AR  I   HI +  + + +P ++V    +  + + + SP
Sbjct:    9 KLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.035e-18
Identity = 51/149 (34.23%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEF 570
            K +  P  P+  +R+  E RL  +YGL+ K+E+W+ +  + R R  AR +L +D     R  + + LL  + R GF+  +  KL+ VL L VE+ L RRLQ+LVFK G++ +   AR+ +   HI +  + +N P  +V    +++I+F
Sbjct:    9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.035e-18
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  112 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            R   K +  P  P+  ER+  E +L+ +YGL+ K+E+W+    + R    AR LL  D    +   E   LL  + R G L E    L+ VL LTVE+ L RRLQT+V+K G+A++   AR+ +   HI +  + +N PS+VV    +  I F  +SP
Sbjct:    5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.990e-15
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1
Query:  451 AKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            AKS+HHARVLIRQRHI VGRQ+VN+PSF+VR+DSQKHI+FSL SP
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISP 45          
The following BLAST results are available for this feature:
BLAST of CX305191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_UNCMA1.731e-1832.0830S ribosomal protein S4P OS=Uncultured methanogen... [more]
RS4_METST5.035e-1834.2330S ribosomal protein S4P OS=Methanosphaera stadtm... [more]
RS4_METS35.035e-1836.0830S ribosomal protein S4P OS=Methanobrevibacter sm... [more]
RS9_TOBAC3.990e-1582.2240S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]

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Properties
Property NameValue
Genbank descriptionC18002C10Rv Drought1 Citrus clementina cDNA clone C18002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305191 ID=CX305191; Name=CX305191; organism=Citrus clementina; type=EST; length=586bp
GCGGGGAGACACGGCCTCTTTACGCCATTTGCTTAGGCTTTTTCGAAGAT
CGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACA
TTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCC
TATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATGG
GCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGCA
TCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGT
CGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTT
CTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGG
AGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATG
GCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAN
GGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATT
CCCAGAAGCACATTGAATTCTCACTGACAAGTCCAT
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