CX305191
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.731e-18 Identity = 51/159 (32.08%), Postives = 90/159 (56.60%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 K + P P++K R+D E LV +YGLR K+ +W+ L + R+ AR LL + ++ I + + +++++ G L+E KL+ VLAL V++ +ERRLQT++++ G A SI AR I HI + + + +P ++V + + + + SP Sbjct: 9 KLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.035e-18 Identity = 51/149 (34.23%), Postives = 85/149 (57.05%), Query Frame = 1 Query: 124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEF 570 K + P P+ +R+ E RL +YGL+ K+E+W+ + + R R AR +L +D R + + LL + R GF+ + KL+ VL L VE+ L RRLQ+LVFK G++ + AR+ + HI + + +N P +V +++I+F Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.035e-18 Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 1 Query: 112 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 R K + P P+ ER+ E +L+ +YGL+ K+E+W+ + R AR LL D + E LL + R G L E L+ VL LTVE+ L RRLQT+V+K G+A++ AR+ + HI + + +N PS+VV + I F +SP Sbjct: 5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.990e-15 Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 Query: 451 AKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 AKS+HHARVLIRQRHI VGRQ+VN+PSF+VR+DSQKHI+FSL SP Sbjct: 1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISP 45 The following BLAST results are available for this feature:
BLAST of CX305191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CX305191 ID=CX305191; Name=CX305191; organism=Citrus clementina; type=EST; length=586bpback to top |