CX305194

Overview
NameCX305194
Unique NameCX305194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14738 contig Ccv1_Contig14738:133..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.399e-25
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:   10 FDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.399e-25
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:   10 FDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.399e-25
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:   10 FDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.399e-25
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:   10 FDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.399e-25
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:   10 FDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.399e-25
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:   10 FDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 7.051e-25
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  212 YDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  +   D++K+HGF
Sbjct:   10 FDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.209e-25
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = -3
Query:  212 YDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD  D  A     Y+H+R+QQRNG+K LTTVQG+ E++  ++ILK L+K+F CNGN+V D  +G++IQLQGD R  V  FL+    + K  IKIHGF
Sbjct:    9 FDPFADTGDDEA-SSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.571e-24
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = -3
Query:  212 YDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 514
            +DPFAD  D        Y+H+R+QQRNG+K LTTVQG+ E++  ++ILK LKK+F CNGN+V D  +G++IQLQGD R  V  F++    + K  IKIHGF
Sbjct:    9 FDPFADTGDD-ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          
BLAST of CX305194 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 6.600e-23
Identity = 55/100 (55.00%), Postives = 68/100 (68.00%), Query Frame = -3
Query:  212 DPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 511
            DPFAD  D  A      +H+R+QQRNG+K LTTVQGL  +F  ++IL+ LKK+F CNG +V D  LG+VIQLQGD R  VM FL +   + K  IKIHGF
Sbjct:   11 DPFADTGDDDAQ-PLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
The following BLAST results are available for this feature:
BLAST of CX305194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EIF1_HUMAN5.399e-2550.00Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN5.399e-2550.00Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1B_PIG5.399e-2550.00Eukaryotic translation initiation factor 1b OS=Sus... [more]
EIF1B_MOUSE5.399e-2550.00Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA5.399e-2550.00Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN5.399e-2550.00Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_MOUSE7.051e-2549.04Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_ASHGO9.209e-2552.48Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_YEAST1.571e-2451.49Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_SCHPO6.600e-2355.00Protein translation factor sui1 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC18002D03Rv Drought1 Citrus clementina cDNA clone C18002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305194 ID=CX305194; Name=CX305194; organism=Citrus clementina; type=EST; length=516bp
GACTTTNTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAATATCCATAACTT
TTATTATCATTATCCATAACTTGAGAACAGAAAATCTTAAATCCAAGTCC
AGAGAAATACAGAAAACCTCAACAAGAACAGACTACAGATATGCTCTGCA
GATCACATAAGACCACATATATTATACCATAACCATATGTATTAATCACC
ACATTTGCTTAGAAACCATGAATCTTGATACGATCCTTGTCCACAATCTT
ACTCTTAACGAGAAAGATCATAACATTCTTCCGATGATCACCTTGAAGCT
GAATCACCTTCCCGAGAACTTTGTCATTGACAACATTCCCGTTACAACAG
AACTCCTTTTTGAGGTCCTTGAGGATCTTCTGGTAGCCAAAATCCTCTTT
AAGTCCTTGAACAGTTGTTAAGCACTTCTTTCCATTCCTCTGCTGTACGC
GGAGATGCACGTACCCTTTGTCACCTGGGGCAAGGGAGTCCTTTATATCA
GCAAAGGGATCATAGG
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