CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFN (40S ribosomal protein S1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rps1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.243e-21
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +IM  +AASC L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_NEUCR (40S ribosomal protein S1 OS=Neurospora crassa GN=crp-8 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.236e-21
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SENVGVKVDRPADEPMPEA 446
            RRKM +I+  +A+SC L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+  S+  G KV+R   E + E+
Sbjct:  165 RRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMSLHGESGSDEAGQKVEREFKETVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_NEOFI (40S ribosomal protein S1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.236e-21
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +IM  +AASC L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFU (40S ribosomal protein S1 OS=Aspergillus fumigatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.236e-21
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +IM  +AASC L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFC (40S ribosomal protein S1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.236e-21
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +IM  +AASC L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PYRTR (40S ribosomal protein S1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.226e-21
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = -3
Query:  180 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPE 446
            R+KM +IM   A+SC L  L +K I EV GREIEKAT  IYPLQNV +RKVK+LKAPKFDLG L+ +HG+ S ++ G KV+R   E + E
Sbjct:  164 RKKMVEIMARDASSCTLAQLTQKLIPEVIGREIEKATQGIYPLQNVHVRKVKLLKAPKFDLGALLGLHGESSQDDSGQKVEREFKETVLE 253          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ASPTN (40S ribosomal protein S1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.226e-21
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +IM  +AASC L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ASPNC (40S ribosomal protein S1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rps1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.226e-21
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +IM  +AASC L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CHAGB (40S ribosomal protein S1 OS=Chaetomium globosum GN=RPS1 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.233e-20
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            RRKM +I+  +A+SC L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+ S +  G KV+R   E + E+
Sbjct:  165 RRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMTLHGESSTDEQGQKVEREFREQVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PHANO (40S ribosomal protein S1 OS=Phaeosphaeria nodorum GN=RPS1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.746e-20
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+KM +IM   A+SC L  L +K I EV GREIEK+T  IYPLQNV +RKVK+LKAPKFDLG L+ +HG+ S ++ G KV+R   E
Sbjct:  164 RKKMVEIMTRDASSCTLAQLTQKLIPEVIGREIEKSTQGIYPLQNVHVRKVKLLKAPKFDLGALLGLHGESSADDSGQKVEREFKE 249          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_ASPFN3.243e-2158.2440S ribosomal protein S1 OS=Aspergillus flavus (st... [more]
RS3A_NEUCR4.236e-2158.2440S ribosomal protein S1 OS=Neurospora crassa GN=c... [more]
RS3A_NEOFI4.236e-2158.2440S ribosomal protein S1 OS=Neosartorya fischeri (... [more]
RS3A_ASPFU4.236e-2158.2440S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPFC4.236e-2158.2440S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_PYRTR7.226e-2157.7840S ribosomal protein S1 OS=Pyrenophora tritici-re... [more]
RS3A_ASPTN7.226e-2157.1440S ribosomal protein S1 OS=Aspergillus terreus (s... [more]
RS3A_ASPNC7.226e-2157.1440S ribosomal protein S1 OS=Aspergillus niger (str... [more]
RS3A_CHAGB1.233e-2058.2440S ribosomal protein S1 OS=Chaetomium globosum GN... [more]
RS3A_PHANO2.746e-2058.1440S ribosomal protein S1 OS=Phaeosphaeria nodorum ... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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