CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DANRE (40S ribosomal protein S3a OS=Danio rerio GN=rps3a PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 8.267e-17
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = -3
Query:  237 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGE 234          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.267e-17
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+KM +I+  +A+S  L  L  K + EV GREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.267e-17
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+KM +I+  +A+S  L  L  K + EV GREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.080e-16
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = -3
Query:  183 RKMRQIMVA----QAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGV---KVDRPADEPMP 443
            RK+R  M++    +   CDLK +V K I +  G++IEK  S +YPLQ V+IRKVKI+K PK DLG+L ++HGD S  VG    KVDRP D   P
Sbjct:  160 RKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKIDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDS (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.080e-16
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+K+ +I+  +A++  L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDR (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.080e-16
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+K+ +I+  +A++  L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_AJECN (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.080e-16
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+K+ +I+  +A+S  L  L  K I EV GREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKITEIIQREASSRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.080e-16
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  207 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVD 446
            R+KM +IM  + ++  L  L  K I EV GREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E  G KV+
Sbjct:  165 RKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGALLALHGEGSTEEKGKKVN 245          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PLAYO (40S ribosomal protein S3a OS=Plasmodium yoelii yoelii GN=PY02291 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.410e-16
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKV 446
            R+KM  IM A+A+   LK LV+K I E  G+E+EK    I+PLQNV IRKVKILK PK D+ KLME+H D  E+ G  V
Sbjct:  165 RKKMVDIMHAEASKVLLKDLVKKIIPESIGKEVEKQCKKIFPLQNVLIRKVKILKRPKLDISKLMELHSDPKEDSGKNV 243          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.410e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = -3
Query:  171 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSENVGVKVDRPADEPMPEAPT 446
            R+KM +I+     S DLK +V K + +   ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD    S+  G +VDRP     P   T
Sbjct:  168 RKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGGSDEPGARVDRPEGYEPPVQET 262          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_DANRE8.267e-1755.7140S ribosomal protein S3a OS=Danio rerio GN=rps3a ... [more]
RS3A_COCP78.267e-1753.8540S ribosomal protein S1 OS=Coccidioides posadasii... [more]
RS3A_COCIM8.267e-1753.8540S ribosomal protein S1 OS=Coccidioides immitis G... [more]
RS3A_CAEBR1.080e-1650.0040S ribosomal protein S3a OS=Caenorhabditis briggs... [more]
RS3A_AJEDS1.080e-1652.7540S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJEDR1.080e-1652.7540S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJECN1.080e-1652.7540S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A2_PICST1.080e-1655.5640S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]
RS3A_PLAYO1.410e-1655.7040S ribosomal protein S3a OS=Plasmodium yoelii yoe... [more]
RS3A_PERAM1.410e-1645.2640S ribosomal protein S3a OS=Periplaneta americana... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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