CX305211

Overview
NameCX305211
Unique NameCX305211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.286e-20
Identity = 49/65 (75.38%), Postives = 53/65 (81.54%), Query Frame = -2
Query:  207 RMSLASFYNPASDPVIYPAPALLEKEAE-KKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVA 398
            RMSLASFYNP SD VI+PAPAL+EKEAE KK VYPKFVFE YM LY  LKFQ K+PRF+ MK  A
Sbjct:  245 RMSLASFYNPGSDAVIFPAPALVEKEAEEKKEVYPKFVFEDYMNLYAGLKFQAKEPRFEVMKMKA 309          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.986e-20
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = -2
Query:  198 GRMSLASFYNPASDPVIYPAPALLEKEAEK--KPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATNV 401
            GRMS+ASFYNP SD VI+PAP L+ KEAEK  K  YP+FVFE YMKLY  +KFQ K+PRF+AMKA+ T V
Sbjct:  244 GRMSIASFYNPGSDSVIFPAPELIGKEAEKEKKENYPRFVFEDYMKLYSAVKFQAKEPRFEAMKAMETTV 313          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.899e-20
Identity = 46/68 (67.65%), Postives = 58/68 (85.29%), Query Frame = -2
Query:  201 RMSLASFYNPASDPVIYPAPALLEKEAEK--KPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATN 398
            RMSLASFYNP +D +IYPAPAL++KEAE+  K VYPKF+F+ YMKLY  LKFQ K+PRF+AMKA+ ++
Sbjct:  244 RMSLASFYNPGNDALIYPAPALVDKEAEEHNKQVYPKFMFDDYMKLYANLKFQAKEPRFEAMKAMESD 311          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.135e-19
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = -2
Query:  201 RMSLASFYNPASDPVIYPAPALLEKEAEKKP-VYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVATN 398
            RMSLASFYNP SD VIYPA  L+EKEAE+   VYPKFVF+ YMKLY  LKFQ K+PRF+AMKA+ ++
Sbjct:  244 RMSLASFYNPGSDAVIYPAKTLVEKEAEESTQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMKAMESD 310          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.482e-19
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = -2
Query:  204 RMSLASFYNPASDPVIYPAPALLEKEAEK-KPVYPKFVFEGYMKLYVPLKFQPKDPRFQAM-KAVAT 398
            RMSLASFYNP SD VI+PAP L+EKEAE+ K +YPKFVF+ YMKLY  LKFQ K+PRF+AM KA+ T
Sbjct:  244 RMSLASFYNPGSDAVIFPAPTLVEKEAEESKAIYPKFVFDDYMKLYAGLKFQAKEPRFEAMIKAMET 310          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.528e-19
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = -2
Query:  210 RMSLASFYNPASDPVIYPAPALLEKEAE---KKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAV 398
            RMS+ASFYNP SD VI+PAPAL+EKEAE   KK +YPKFVF+ YM LY+  KF+ K+PRF+AMK++
Sbjct:  248 RMSIASFYNPGSDAVIFPAPALVEKEAEEEEKKEIYPKFVFQDYMNLYIRKKFEAKEPRFEAMKSM 313          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.311e-19
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = -2
Query:  210 RMSLASFYNPASDPVIYPAPALLEKEAE-----KKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAV 398
            RMS+ASFYNP SD VI+PAPAL+EKEAE     KK +YPKFVF+ YM LY+  KF+ K+PRF+AMK++
Sbjct:  248 RMSIASFYNPGSDAVIFPAPALVEKEAEEKEEKKKEIYPKFVFQDYMNLYIRKKFEAKEPRFEAMKSM 315          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.631e-19
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = -2
Query:  210 RMSLASFYNPASDPVIYPAPALLEKEA--EKKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAV 398
            RMS+ASFYNP SD VI+PAP L+EKEA  +KK  YPKFVFE YMKLYV  KF+ K+PRF+AMK +
Sbjct:  242 RMSIASFYNPGSDAVIFPAPELVEKEAAEKKKETYPKFVFEDYMKLYVRQKFEAKEPRFEAMKTM 306          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.631e-19
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = -2
Query:  213 RMSLASFYNPASDPVIYPAPALLEKEAEKKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKA 398
            RMS+ASFYNP +D  I PAPA+LEK+ E  P YPKFVF+ YMKLY  LKFQ K+PRF+AMKA
Sbjct:  244 RMSIASFYNPGNDSFISPAPAVLEKKTEDAPTYPKFVFDDYMKLYSGLKFQAKEPRFEAMKA 305          
BLAST of CX305211 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.254e-18
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = -2
Query:  204 RMSLASFYNPASDPVIYPAPALLEKEAEKKPVYPKFVFEGYMKLYVPLKFQPKDPRFQAMKAVAT 398
            RMS+ASFYNP  D  I PAPALLE+++E  P YPKF+F+ YMKLY  LKFQ K+PRF+AMKA  T
Sbjct:  244 RMSIASFYNPGDDAFISPAPALLEEKSEVSPTYPKFLFDDYMKLYSGLKFQAKEPRFEAMKARET 308          
The following BLAST results are available for this feature:
BLAST of CX305211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACCO_PERAE2.286e-2075.381-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO1_ARATH2.986e-2068.571-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
ACCO2_SOLLC3.899e-2067.651-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
ACCO1_SOLLC1.135e-1970.151-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO_TOBAC1.482e-1971.641-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
ACCO2_DORSP2.528e-1966.671-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO1_DORSP4.311e-1964.711-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO_DENCR5.631e-1969.231-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO1_MALDO5.631e-1969.351-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCO2_MALDO1.254e-1866.151-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]

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Properties
Property NameValue
Genbank descriptionC18002E10Rv Drought1 Citrus clementina cDNA clone C18002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305211 ID=CX305211; Name=CX305211; organism=Citrus clementina; type=EST; length=402bp
TCTGTTTTTTTTTTTTTTTTTTTTTTTTTTACTACGAAACACAGTTTATT
TTATTTATTTGGAAGAGACTACTATCACAGAGGAGTTACATTTGTTACTG
GCTACAAATAATATAAATGGATGTGACACCACTCCAGCAGATAAAAATAA
TTTGGCTATAAAATAATAGTTTAAGCGGGGGCAATTGGACCCAAGTTAAC
ATTAGTTGCCACAGCTTTCATGGCTTGAAATCTGGGATCCTTGGGCTGGA
ACTTGAGGGGAACATACAGCTTCATGTAGCCCTCAAAAACAAATTTTGGG
TACACTGGTTTCTTCTCAGCTTCTTTTTCAAGCAATGCTGGTGCTGGATA
GATCACAGGATCACTTGCAGGATTGTAGAATGAAGCTAGGGACATCCGGC
CC
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