CX305225

Overview
NameCX305225
Unique NameCX305225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305225_ssr139 microsatellite CX305225_ssr139:139..150. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:153..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.601e-38
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = -2 
Query:  211 QIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 528
            Q  WDL A SA+C+TWDA+KP AWR KYGWTAFC   GP GQA+CG+CLRV N+ T A   VRIVDQC+NGGLDLD  +F ++DT+G GYQQG L V Y+FV+C +
Sbjct:   88 QNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193
[Close]
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.098e-31
Identity = 59/87 (67.82%), Postives = 72/87 (82.76%), Query Frame = -2 
Query:  211 KPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 471
            KP +WR KYGWTAFC   GP G+ +CG+CLRVTN+GTGA  IVRIVDQC+NGGLDLD GVF ++DT+G GYQQG L V+Y+FV+C +
Sbjct:    1 KPYSWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87
The following BLAST results are available for this feature:
BLAST of CX305225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HEVL_ARATH4.601e-3864.15Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
WIN_SOYBN1.098e-3167.82Wound-induced protein (Fragment) OS=Glycine max GN... [more]

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Properties
Property NameValue
Genbank descriptionC18002G02Rv Drought1 Citrus clementina cDNA clone C18002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305225 ID=CX305225; Name=CX305225; organism=Citrus clementina; type=EST; length=529bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGGGATAAAAAAAGGAAACT
TTTATTACATAACTGTAGTGCCCATGAGCACTTCTTGATACTTCATCAGA
AGTTTTATTTTTATTTATGAACTAAGTATATAGAGGGATAATTAATTAAT
AAATTAACCCTATTACAGCATTAAGCTTCGATCGATCATGGAATTATAGA
TGGTGCTTTAATCATTGCAGTTCACAAACTCGTAGCTGACAGTAAGGAAG
CCTTGTTGATAGCCTATTCCATTGGTGTCCAATTTCTTGAACACTCCTTC
GTCCAAATCTAAGCCTCCATTGGCACACTGATCAACAATTCTCACAATTT
GCTGGGCTCCTGTACCACTGTTTGTGACCCTTAAGCACCTGCCACAAGCA
GCTTGTCCAATGGGTCCGCCCGAATGACAGAAAGCAGTCCAGCCATATTT
CTGGCGCCAGGCCAAGGGCTTGTTGGCATCCCATGTTGCGCAGAAAGCGC
TCGCTGCCGTCAAGTCCCATCCAATTTGC
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