CX305227

Overview
NameCX305227
Unique NameCX305227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.251e-26
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YDFDF T+ NCQKSKI FIAWSPD S+VRSKM+YASSKDRFKRE++GIQV+LQATDP+EM LD++K R N
Sbjct:   70 YDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRLN 139          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.788e-26
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            YDFDF+T +N QKS+I FIAWSPD ++VRSKMIYASSKDRFKRELDGIQV+LQATDPTEMGLDV ++R+
Sbjct:   70 YDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRA 138          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.756e-26
Identity = 52/69 (75.36%), Postives = 63/69 (91.30%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            +DFDF T++NCQKSKI FIAWSPD S+VR KM+YASSKDRFKRELDGIQV+LQATDP+EM  D++K+R+
Sbjct:   57 FDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.807e-25
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            YDFDF T +N QKSKI FIAWSPD S+VR KM+YASSKDRFKRELDGIQV+LQATDP+EM LD++K+R+
Sbjct:   68 YDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.171e-24
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YD DFVTD+NCQKSKI F +WSPD ++ RSKM+YASSKDRF+RELDGIQ ++QATDP+EM LD+++ R++
Sbjct:   70 YDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARAH 139          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.998e-24
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            +DFDFV+ +   +S+I F+AWSPD ++VRSKMIYASSKDRFKRELDGIQV+LQATDPTEM LDV K+R+N
Sbjct:   70 FDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.609e-24
Identity = 47/70 (67.14%), Postives = 63/70 (90.00%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YDFDFVT +NCQKSKI FIAWSPD S++R+KM+YA+SK+RF+RELDG+  ++QATDPTEM L+V++ R++
Sbjct:   74 YDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERAH 143          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.408e-24
Identity = 48/70 (68.57%), Postives = 61/70 (87.14%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YD DF T +NCQKSKI F +WSPD ++ RSKM+YASSKDRF+RELDGIQ ++QATDP+EM LD++K+R+N
Sbjct:   70 YDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSRTN 139          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.592e-24
Identity = 47/70 (67.14%), Postives = 61/70 (87.14%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YD DF T +NCQKSKI F +WSPD ++ RSKM+YASSKDRF+RELDGIQ ++QATDP+EM LD++++R+N
Sbjct:   70 YDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSRTN 139          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.190e-22
Identity = 41/70 (58.57%), Postives = 63/70 (90.00%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YDFDFVT++NCQKSKI F+AWSP  S++R+KM+YA+SK+RF+RELDG+  ++QATDP+E+ +++++ R++
Sbjct:   76 YDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
The following BLAST results are available for this feature:
BLAST of CX305227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ADF8_ARATH1.251e-2677.14Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF2_PETHY2.788e-2679.71Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF_BRANA4.756e-2675.36Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF12_ARATH1.807e-2576.81Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF9_ORYSJ1.171e-2468.57Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF3_ARATH1.998e-2472.86Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF_VITVI2.609e-2467.14Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF2_MAIZE3.408e-2468.57Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF1_MAIZE7.592e-2467.14Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF11_ORYSJ3.190e-2258.57Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC18002G04Rv Drought1 Citrus clementina cDNA clone C18002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305227 ID=CX305227; Name=CX305227; organism=Citrus clementina; type=EST; length=401bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTT
TTTTTTTTTTAAAAAAGTATTTAACTCCGACCACAAGCCGATAGCAAAGC
AAGTTATAAGTCATAAAAGATATAGACATTACATTTAAGTGAACAATATA
GTATGGGCTTTCCATTGCACCATAGGCAAGTCTAAAATTTAATTCGAACG
GGTTTTCATGACATCAAGACCCATTTCAGTAGGATCAGTAGCCTGCAACT
TTACCTGAATTCCATCCAATTCTCTTTTGAACCTGTCCTTGGAGCTAGCA
TAAATCATTTTGCTTCTCACCTTTGAGGGGTCGGGGGACCATGCAATGAA
AATAATCTTGCTCTTTTGGCAGTTCTTATCAGTCACAAAGTCAAAATCAT
A
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