CX305227

Overview
NameCX305227
Unique NameCX305227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.857e-21
Identity = 43/70 (61.43%), Postives = 59/70 (84.29%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YDFDFVT +N QKSKI FIAWSP  S++R+KM+Y++SKDR K+ELDG   ++QATDPTE+ L+V++ R++
Sbjct:   76 YDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERAH 145          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.340e-20
Identity = 43/69 (62.32%), Postives = 58/69 (84.06%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            +DFDFVT  NC+KSKI FIAWSP+ SK+R+K++YA+SKD  +R L+GI  +LQATDPTEMG D+++ R+
Sbjct:   74 FDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRA 142          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.750e-20
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YDFDFVT +NCQKSKI F AWSP  S +R+K++Y++SKD+  REL GI  ++QATDPTE+ L+V++ R+N
Sbjct:   77 YDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.311e-19
Identity = 39/70 (55.71%), Postives = 57/70 (81.43%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YD DFV+D NC+KSKI FI+WSP  S++R+K IYA S+++F+ ELDG+  ++QATDP +M L+V++ R+N
Sbjct:   80 YDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.140e-18
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = -1
Query:  198 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTR 401
            YDFDF+T ++  KS+I +I WSPD +KVRSKM+YASS +RFK+EL+GIQ+++QATD  E+ LD +K R
Sbjct:   70 YDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.794e-18
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            +DFDFVT  NCQKSKI FIAWSP  S++R+K++YA+SK   +R LDG+  ++QATD +EMG DV++ R+
Sbjct:   74 FDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRA 142          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.767e-18
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            +DFD+VT  NC+ SKI FI WSP+ S++R KM+YA+SK   +R LDG+  +LQATDPTEMG D ++ R+
Sbjct:   61 FDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRA 129          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.387e-17
Identity = 38/70 (54.29%), Postives = 55/70 (78.57%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YD DFV+D NC+KSKI FI+WSP  S +R+K IYA  +++F+ ELDG+  ++QATDP +M L+V++ R+N
Sbjct:   75 YDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.387e-17
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            YDFDFVT ++ QKS+I +I WSP  +KV+SKM+YASS  +FK  L+GIQV+LQATD +E+ LD +K R+
Sbjct:   70 YDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRA 138          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 34/58 (58.62%), Postives = 48/58 (82.76%), Query Frame = -1
Query:  192 KSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 365
            +SKI F++WSP  + VRSKM+YASS + FK+ELDG+Q+ LQATDP+E+ LDV+K  ++
Sbjct:   93 RSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150          
The following BLAST results are available for this feature:
BLAST of CX305227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ADF2_ORYSJ7.857e-2161.43Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF5_ARATH1.340e-2062.32Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF6_ARATH1.750e-2060.00Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF10_ORYSJ4.311e-1955.71Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF4_ORYSJ2.140e-1860.29Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF5_ORYSJ2.794e-1857.97Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF9_ARATH4.767e-1856.52Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF8_ORYSJ1.387e-1754.29Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF3_MAIZE1.387e-1759.42Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF3_ORYSJ1.099e-1458.62Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionC18002G04Rv Drought1 Citrus clementina cDNA clone C18002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305227 ID=CX305227; Name=CX305227; organism=Citrus clementina; type=EST; length=401bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTT
TTTTTTTTTTAAAAAAGTATTTAACTCCGACCACAAGCCGATAGCAAAGC
AAGTTATAAGTCATAAAAGATATAGACATTACATTTAAGTGAACAATATA
GTATGGGCTTTCCATTGCACCATAGGCAAGTCTAAAATTTAATTCGAACG
GGTTTTCATGACATCAAGACCCATTTCAGTAGGATCAGTAGCCTGCAACT
TTACCTGAATTCCATCCAATTCTCTTTTGAACCTGTCCTTGGAGCTAGCA
TAAATCATTTTGCTTCTCACCTTTGAGGGGTCGGGGGACCATGCAATGAA
AATAATCTTGCTCTTTTGGCAGTTCTTATCAGTCACAAAGTCAAAATCAT
A
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