CX305227

Overview
NameCX305227
Unique NameCX305227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = -1
Query:  192 DFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 398
            D +FV  +     KI FIAWSP  +K+R KMIY+S+KDRFKRELDGIQV+  ATD T++ LD ++ R N
Sbjct:   69 DIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12
Identity = 29/66 (43.94%), Postives = 48/66 (72.73%), Query Frame = -1
Query:  207 YDFDF-VTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVM 401
            YDF++ +++   ++SKI+F  WSPD + VR KM+YASSKD  KR L+G+ +++Q TD +E+  + +
Sbjct:   67 YDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAV 132          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            +D++F  D   Q++KI FI W+PD + ++SKM+Y S+KD  K++L GIQV++QATD  E+  D +  R+
Sbjct:   66 FDYEFQVDGG-QRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.533e-11
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = -1
Query:  198 YDFDFVTDKN-CQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTR 401
            YDF++  + N  ++SKI+F  WSPD + VRSKM+YASSKD  +R L+G+   +Q TD +E+  D +  R
Sbjct:   67 YDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLER 135          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.644e-11
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = -1
Query:  198 YDFDF-VTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTR 401
            YDF++ ++    ++SK++F  WSPD + VRSKMIYASSKD  +R L GI  ++Q TD +E+  + +  R
Sbjct:   77 YDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLER 145          
The following BLAST results are available for this feature:
BLAST of CX305227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ADF11_ARATH1.099e-1456.52Putative actin-depolymerizing factor 11 OS=Arabido... [more]
COFI_CANGA8.707e-1243.94Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
ACTP_ACACA1.485e-1144.93Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YEAST2.533e-1146.38Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_YARLI5.644e-1144.93Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18002G04Rv Drought1 Citrus clementina cDNA clone C18002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305227 ID=CX305227; Name=CX305227; organism=Citrus clementina; type=EST; length=401bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTT
TTTTTTTTTTAAAAAAGTATTTAACTCCGACCACAAGCCGATAGCAAAGC
AAGTTATAAGTCATAAAAGATATAGACATTACATTTAAGTGAACAATATA
GTATGGGCTTTCCATTGCACCATAGGCAAGTCTAAAATTTAATTCGAACG
GGTTTTCATGACATCAAGACCCATTTCAGTAGGATCAGTAGCCTGCAACT
TTACCTGAATTCCATCCAATTCTCTTTTGAACCTGTCCTTGGAGCTAGCA
TAAATCATTTTGCTTCTCACCTTTGAGGGGTCGGGGGACCATGCAATGAA
AATAATCTTGCTCTTTTGGCAGTTCTTATCAGTCACAAAGTCAAAATCAT
A
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