CX305572

Overview
NameCX305572
Unique NameCX305572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2006..2468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 9.568e-43
Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPE 446
            RG+AV DP+ PHGLK  +EDYP+ANDGL LW AI+ WV  YV  YY + +L+Q+D +LQAW++E   VGH D +   WWP L T +DL+ +ITTI+W+ S  HA +NFGQY Y GY PNRP   R  I  E  SD ++  F+E P+
Sbjct:  675 RGMAVPDPTQPHGLKLLVEDYPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWYSESINVGHADHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDE--SDPEFTSFIEDPQ 818          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.632e-42
Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATEN 404
            RG+AVEDP APHGL+  I+DYP+A DGL++W AI+ WV DY+  +Y  +  +Q+D +LQAWW E+R  GHGDKK EPWWP ++T ++L+E  T I+WV S  HA VNFGQY   GY PNRPT +R  +  EN
Sbjct:  609 RGMAVEDPEAPHGLRLRIKDYPYAVDGLEVWYAIESWVRDYIFLFYKIEEDIQTDTELQAWWKEVREEGHGDKKSEPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPVAGYLPNRPTISRQYMPKEN 740          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 8.100e-42
Identity = 78/151 (51.66%), Postives = 94/151 (62.25%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALLN 461
            RG+AVED + PHG++  IEDYP+ANDGL LW AI+ WV  YV  YYPD   VQ D +LQ W+ E   VGHGD +H PWWP L TP DL  I+TT+VW+ S  HA +NFGQY   GY PNRP   R  +        ++  FL  P    LN
Sbjct:  663 RGVAVEDATQPHGVRLLIEDYPYANDGLLLWSAIRSWVESYVQLYYPDAGTVQCDLELQGWYHESIHVGHGDLRHAPWWPPLSTPVDLASILTTLVWLASAQHAALNFGQYPLGGYVPNRPPLIRRLLPDLERDAAEYAAFLADPHRFFLN 813          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.804e-41
Identity = 71/125 (56.80%), Postives = 89/125 (71.20%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            RG+AVEDPS+P+GL+  +EDYP+A DGL++WD I+ WV DYV+ YYP    V+ D +LQAWW E    GHGD K +PWWP L TP+DLI   + I+W+ S  HA VNFGQY Y G+  NRPT  R
Sbjct:  611 RGMAVEDPSSPYGLRLVVEDYPYAVDGLEIWDTIQTWVKDYVSLYYPTNDAVKKDTELQAWWKEAVEKGHGDLKDKPWWPKLNTPQDLIHTCSIIIWIASALHAAVNFGQYPYGGFILNRPTITR 735          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.078e-41
Identity = 76/140 (54.29%), Postives = 94/140 (67.14%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKF 428
            RG+AV        L+  IEDYP+ANDGL +WDAIKQW +DYV HYYP    +  DE+LQ WWTE+RT GH DK+ EPWWP L   + L++++ TI+WVTS HHA VNFGQY   GY PN P+ AR N+  E   +E   F
Sbjct:  678 RGMAVRGEDGK--LELAIEDYPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEVRTKGHPDKQDEPWWPELDCHESLVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCEMGPEEMLAF 815          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.020e-41
Identity = 74/146 (50.68%), Postives = 98/146 (67.12%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPE 446
            RG+A+ D + PHGLK  IEDYP+ANDGL LW AI+ WV  YV  YYP+ +L+++D +LQ+W++E   VGH D +   WWP L T  DL+ I+TT++W+ S  HA +NFGQY Y GY PNRP   R  I  E  SD ++  F+  PE
Sbjct:  668 RGMAIPDATQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSESINVGHADLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDE--SDPEYASFISHPE 811          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 5.250e-41
Identity = 75/150 (50.00%), Postives = 99/150 (66.00%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALL 458
            RG+A ED SA  G++  I+DYP+A DGL +W AIK  V  YV H+Y D   + SD +LQAWW EI+  GH DKK EPWWP L T +DL +I+T ++W+ SG HA +NFGQY + GY PNRPT  R  I  E  +D  ++ F+  P+ + L
Sbjct:  665 RGMAEEDSSAECGVRLVIDDYPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQE--TDPDYEMFMRNPQYSFL 812          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 6.857e-41
Identity = 75/150 (50.00%), Postives = 103/150 (68.67%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALL 458
            RG+A+EDPS+P G+K  +EDYP+A DGL++W  IK WV DYV+ YY     ++ D +LQAWW E+  VGHGDKK+EPWWP ++T +DLIE+ + ++W  S  HA VNFGQY+Y G   NRPT +R     E  S E ++  ++ P+ A L
Sbjct:  611 RGMAIEDPSSPCGVKLVVEDYPYAVDGLEIWAIIKTWVQDYVSLYYTSDEKLRQDSELQAWWKELVEVGHGDKKNEPWWPKMQTREDLIEVCSIVIWTASALHAAVNFGQYSYGGLILNRPTLSR-RFMPEKGSAE-FEELVKSPQKAYL 758          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.170e-40
Identity = 68/125 (54.40%), Postives = 92/125 (73.60%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            RG+AV DP++P+ ++  IEDYP+ANDGL +W AI+QW T+Y+  YYP+  ++Q D +LQAWW E+R VGHGD K   WWP +KT  +L++   TI+W+ S  HA VNFGQY Y GY PNRP+ +R
Sbjct:  614 RGVAVPDPASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREVGHGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPYAGYLPNRPSVSR 738          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.528e-40
Identity = 72/146 (49.32%), Postives = 99/146 (67.81%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPE 446
            RG+A++DPS+P  +K  I+DYP+A DGL +W AI+QWVT+Y   YYP+  ++Q D +LQAWW E+R VGHGD K   WWP +++  +L +  TTI+W+ S  HA VNFGQY Y GY PNRPT +R  +    P  +++    E PE
Sbjct:  607 RGIAIKDPSSPSKVKLLIKDYPYATDGLAIWQAIEQWVTEYCAIYYPNDGVLQGDVELQAWWKEVREVGHGDLKDADWWPKMQSLPELTKACTTIIWIASALHAAVNFGQYPYAGYLPNRPTISRRPM--PEPGSKEYTELDENPE 750          
The following BLAST results are available for this feature:
BLAST of CX305572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
LOX4_ARATH9.568e-4352.74Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX1_ARATH1.632e-4256.06Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX6_ORYSJ8.100e-4251.66Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOXA_PHAVU1.804e-4156.80Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX22_HORVU3.078e-4154.29Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX3_ARATH4.020e-4150.68Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH5.250e-4150.00Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX3_PEA6.857e-4150.00Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX2_ORYSJ1.170e-4054.40Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_ORYSJ1.528e-4049.32Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]

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Properties
Property NameValue
Genbank descriptionC18007D07Rv Drought1 Citrus clementina cDNA clone C18007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305572 ID=CX305572; Name=CX305572; organism=Citrus clementina; type=EST; length=463bp
GCGGGAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGGCTTG
AAGCCAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATCTCTG
GGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACTACCCTG
ATAAAAGCCTTGTACAATCTGATGAACAGCTCCAAGCTTGGTGGACTGAA
ATTCGAACTGTGGGACACGGTGACAAGAAACATGAACCTTGGTGGCCTGT
CTTGAAAACCCCTAAAGATTTAATTGAAATCATCACAACTATTGTTTGGG
TAACATCTGGTCACCACGCAACTGTTAACTTCGGCCAATACACTTACAGA
GGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCACTGA
AAATCCATCTGATGAACAATGGAAATTCTTCCTTGAAAAACCTGAAAATG
CACTTTTGAATAC
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