CX305572

Overview
NameCX305572
Unique NameCX305572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2006..2468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.403e-40
Identity = 73/150 (48.67%), Postives = 99/150 (66.00%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALL 458
            RG+AVED S+PHG++  I DYP+A DGL++W AIK WVT+Y   YY     V+ D +LQAWW E+R  GHGDKK E WWP L+T ++L +  T I+W+ S  HA ++FG Y+Y GY PNRPT + CN+  E P   +++     P+   L
Sbjct:  609 RGVAVEDLSSPHGIRLLILDYPYAVDGLEIWAAIKSWVTEYCKFYYKSDETVEKDTELQAWWKELREEGHGDKKDEAWWPKLQTRQELRDCCTIIIWIASALHAALHFGLYSYAGYLPNRPTLS-CNLMPE-PGSVEYEELKTNPDKVFL 756          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 5.805e-40
Identity = 68/125 (54.40%), Postives = 91/125 (72.80%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            RG+AV+DPSAPHG++  IEDYP+A+DGL++WDAIK WV +YV+ YY     +Q D +LQAWW E+  VGHGD K +PWW  ++T ++L+E    ++W+ S  HA VNFGQY Y G   NRPT +R
Sbjct:  602 RGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVQEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTISR 726          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 7.581e-40
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALLN 461
            RG+AVEDPS+P+ ++  + DYP+A DGL +W AI+Q+V++Y+  YYP+  ++Q D ++QAWW E R VGHGD K  PWWP +++  +L +  TTI+W+ S  HA VNFGQY Y G+ PNRPT +R  +    P  E++      PE A ++
Sbjct:  606 RGMAVEDPSSPYKVRLLVSDYPYAADGLAIWHAIEQYVSEYLAIYYPNDGVLQGDTEVQAWWKETREVGHGDLKDAPWWPKMQSVPELAKACTTIIWIGSALHAAVNFGQYPYAGFLPNRPTVSRRRM--PEPGTEEYAELERDPERAFIH 754          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.689e-39
Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            RG+A+EDPS PHG++  IEDYP+A DGL++WDAIK WV +YV  YY     ++ D +LQA W E+  VGHGDKK+EPWWP ++T ++L+E    I+W  S  HA VNFGQY Y G   NRPT +R
Sbjct:  607 RGMAIEDPSCPHGIRLVIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEPWWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSR 731          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.881e-39
Identity = 70/125 (56.00%), Postives = 90/125 (72.00%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            RG+A++DPSAPHGL+  IEDYP+A DGL++W AIK WV +YV+ YY     V+ D +LQ WW E    GHGD K +PWWP L+T ++L+EI T I+W  S  HA VNFGQY Y G+  NRPT++R
Sbjct:  616 RGVAIKDPSAPHGLRLLIEDYPYAVDGLEIWAAIKTWVQEYVSLYYARDDDVKPDSELQQWWKEAVEKGHGDLKDKPWWPKLQTIEELVEICTIIIWTASALHAAVNFGQYPYGGFILNRPTSSR 740          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 4.914e-39
Identity = 74/151 (49.01%), Postives = 93/151 (61.59%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALLN 461
            RG+AVEDPS PHGL+  IEDYP+A DGL LW AI +W   YV  YYP    VQ+D +LQ+W+ E    GH DK+  PWWP L TP DL  ++TT+VW+ S  HA +NFGQY   GY PNRP   R  +  E   D ++   +  P    L+
Sbjct:  649 RGMAVEDPSQPHGLRLLIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWYAEAVQSGHADKRGAPWWPRLSTPGDLASLLTTLVWLCSAQHAALNFGQYPLGGYIPNRPPLMRRLVPAE--GDPEYAHLVADPHRFFLS 797          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.867e-38
Identity = 70/150 (46.67%), Postives = 97/150 (64.67%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALL 458
            RG+AVED ++P+ ++  I+DYP+A DGL++W AI+QWV +Y+  YY D  +++ D +LQAWW E+R VGHGD K   WWP +    +L +  TTI+W+ S  HA VNFGQY Y GY PNRPT +R  +    P  E +      PE A +
Sbjct:  610 RGVAVEDATSPYKVRLLIKDYPYAADGLEIWHAIEQWVGEYLAIYYTDDGVLRGDAELQAWWAEVREVGHGDLKGAAWWPRMDAVSELRDACTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRRM--PEPGTEAYGELGRDPERAFI 757          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.433e-38
Identity = 64/125 (51.20%), Postives = 91/125 (72.80%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            RG+AV DP++P+ ++  I+DYP+A DGL +W AI++WV +Y+  YYP+  +++ DE+LQAWW E+R VGHGD K + WWP + T ++L    T I+W+ S  HA VNFGQY Y G+ PNRPT +R
Sbjct:  617 RGVAVPDPTSPYNVRLLIKDYPYAVDGLVIWWAIERWVGEYLAIYYPNDGVLRGDEELQAWWKEVREVGHGDLKDQDWWPKMDTVQELTRACTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSR 741          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 7.096e-38
Identity = 67/125 (53.60%), Postives = 87/125 (69.60%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            RG+A++DPS PHG++  IEDYP+A DGL++W AIK WV +YV  YY     V++D +LQ WW E    GHGD K +PWWP L+T +DL+E+   I+W+ S  HA VNFGQY Y G   NRPT +R
Sbjct:  588 RGVAIKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASR 712          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.210e-37
Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            RG+AV+DPS+PHG++  IEDYP+A+DGL++W AIK WV +YVN YY   + +  D +LQA+W E+  VGHGD K   WW  ++  K+LIE  + ++W+ S  HA VNFGQY Y GY  NRPT +R
Sbjct:  615 RGVAVKDPSSPHGVRLLIEDYPYASDGLEIWAAIKSWVEEYVNFYYKSDAAIAQDAELQAFWKELVEVGHGDLKSATWWFKMQNRKELIEACSILIWIASALHAAVNFGQYPYGGYILNRPTKSR 739          
The following BLAST results are available for this feature:
BLAST of CX305572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
LOXB_SOLLC3.403e-4048.67Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX4_SOYBN5.805e-4054.40Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX1_HORVU7.581e-4046.36Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX3_SOYBN1.689e-3955.20Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX2_SOYBN2.881e-3956.00Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX5_ORYSJ4.914e-3949.01Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX3_ORYSJ1.867e-3846.67Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX4_ORYSJ5.433e-3851.20Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX1_SOYBN7.096e-3853.60Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX1_LENCU1.210e-3752.80Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18007D07Rv Drought1 Citrus clementina cDNA clone C18007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305572 ID=CX305572; Name=CX305572; organism=Citrus clementina; type=EST; length=463bp
GCGGGAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGGCTTG
AAGCCAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATCTCTG
GGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACTACCCTG
ATAAAAGCCTTGTACAATCTGATGAACAGCTCCAAGCTTGGTGGACTGAA
ATTCGAACTGTGGGACACGGTGACAAGAAACATGAACCTTGGTGGCCTGT
CTTGAAAACCCCTAAAGATTTAATTGAAATCATCACAACTATTGTTTGGG
TAACATCTGGTCACCACGCAACTGTTAACTTCGGCCAATACACTTACAGA
GGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCACTGA
AAATCCATCTGATGAACAATGGAAATTCTTCCTTGAAAAACCTGAAAATG
CACTTTTGAATAC
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