CX305572

Overview
NameCX305572
Unique NameCX305572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2006..2468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.599e-37
Identity = 67/135 (49.63%), Postives = 92/135 (68.15%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSD 413
            R +AV+D S+P+GL+  IEDYP+A DGL++W AIK WV DYV+ YY   + +++D +LQ WW E+   GHGD K +PWWP L+T  +L+E+ T I+W  S  HA VNFGQY Y G   NRPT +R  +  E  ++
Sbjct:  614 RNMAVKDSSSPYGLRLLIEDYPYAVDGLEIWTAIKTWVQDYVSLYYATDNDIKNDSELQHWWKEVVEKGHGDLKDKPWWPKLQTFDELVEVCTIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEEGTAE 748          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOXE3_HUMAN (Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=ALOXE3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.302e-15
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 3
Query:   60 IEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            I +Y + +DGL +W AI+ +V++ V +YYP  + VQ D +LQAW  EI       ++   +   L TP ++++ +T I++  S  HA VN GQ+ +  + PN P++ R
Sbjct:  503 IPNYHYRDDGLKIWAAIESFVSEIVGYYYPSDASVQQDSELQAWTGEIFAQAFLGRESSGFPSRLCTPGEMVKFLTAIIFNCSAQHAAVNSGQHDFGAWMPNAPSSMR 610          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.221e-15
Identity = 39/109 (35.78%), Postives = 66/109 (60.55%), Query Frame = 3
Query:   57 TIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            TI +Y + +DGL +W AI+++V++ V++YYP  + VQ D +LQAW  EI       ++   +   L TP +L++ +T I++  S  HA  N GQ+ +  + PN P++ R
Sbjct:  502 TIPNYHYRDDGLKIWAAIERFVSEIVSYYYPSDASVQQDCELQAWVGEIFAQAFLGRESSGFPSRLCTPGELVKYLTAIIFNCSAQHAAFNSGQHDFGAWMPNAPSSMR 610          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX5_RAT (Arachidonate 5-lipoxygenase OS=Rattus norvegicus GN=Alox5 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.440e-14
Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 3
Query:   69 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            Y + +DGL +W+AI+ + T+ V+ YY D  +V+ D++LQ +  ++   G   +K   +   +K+ + L E +T +++  S  HA VNFGQY +  + PN P T R
Sbjct:  468 YFYRDDGLLVWEAIQSFTTEVVSIYYEDDQVVEEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMR 572          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX5_MESAU (Arachidonate 5-lipoxygenase OS=Mesocricetus auratus GN=ALOX5 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.456e-14
Identity = 37/110 (33.64%), Postives = 63/110 (57.27%), Query Frame = 3
Query:   69 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIAT 398
            Y + +DGL +W+AI+ + ++ V+ YY D  +V  D++LQ +  ++   G   +K   +   +K+ + L E +T +++  S  HA VNFGQY +  + PN P T R   AT
Sbjct:  468 YFYRDDGLLVWEAIQSFTSEVVSIYYEDDQVVMEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPAT 577          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LX15B_MOUSE (Arachidonate 15-lipoxygenase B OS=Mus musculus GN=Alox15b PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.207e-14
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 3
Query:   60 IEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTT 377
            I  Y + +DG+ +W AIK +V++ V+ YYP  + VQ D++LQAW  EI + G   ++      +L T + L++ IT +++  S  HA V+ GQ+    + PN P T
Sbjct:  469 IPGYYYRDDGMQIWGAIKSFVSEIVSIYYPSDTSVQDDQELQAWVREIFSEGFLGRESSGMPSLLDTREALVQYITMVIFTCSAKHAAVSSGQFDSCVWMPNLPPT 574          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LX12B_RAT (Arachidonate 12-lipoxygenase, 12R type OS=Rattus norvegicus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.207e-14
Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 3
Query:   69 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            Y F +D L +W A++++VT+ + +YYP+ + V+ D +LQ W  EI      +++   +   L+T  +LIE +T +++  S  HA VN GQ  Y  + PN P++ R
Sbjct:  496 YYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLERESSGFPTCLRTVPELIEYVTMVMYTCSARHAAVNTGQLEYTSWMPNFPSSMR 600          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX5_MOUSE (Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alox5 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.471e-14
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 3
Query:   63 EDYPF---ANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            ED PF    +DGL +W+AI+ +  + V+ YY +  +V+ D++LQ +  ++   G   KK   +   +K+ + L E +T +++  S  HA VNFGQY +  + PN P T R
Sbjct:  464 EDMPFYFYRDDGLLVWEAIQSFTMEVVSIYYENDQVVEEDQELQDFVKDVYVYGMRGKKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMR 573          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.332e-14
Identity = 36/105 (34.29%), Postives = 61/105 (58.10%), Query Frame = 3
Query:   69 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            Y F +D L +W A++++VT+ + +YYP+ + V+ D +LQ W  EI       ++   +   L+T  +LIE +T +++  S  HA VN GQ  Y  + PN P++ R
Sbjct:  496 YYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLGRESSGFPTCLRTIPELIEYVTMVMYTCSARHAAVNSGQLEYTSWMPNFPSSMR 600          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX5_HUMAN (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.079e-13
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = 3
Query:   51 KPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            K  I  Y + +DGL +W+AI+ +  + V+ YY    +V+ D +LQ +  ++   G   +K   +   +K+ + L E +T +++  S  HA VNFGQY +  + PN P T R
Sbjct:  463 KEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMR 573          
The following BLAST results are available for this feature:
BLAST of CX305572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
LOX2_PEA4.599e-3749.63Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOXE3_HUMAN1.302e-1535.19Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=A... [more]
LOXE3_MOUSE2.221e-1535.78Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
LOX5_RAT1.440e-1434.29Arachidonate 5-lipoxygenase OS=Rattus norvegicus G... [more]
LOX5_MESAU2.456e-1433.64Arachidonate 5-lipoxygenase OS=Mesocricetus auratu... [more]
LX15B_MOUSE3.207e-1435.85Arachidonate 15-lipoxygenase B OS=Mus musculus GN=... [more]
LX12B_RAT3.207e-1434.29Arachidonate 12-lipoxygenase, 12R type OS=Rattus n... [more]
LOX5_MOUSE5.471e-1434.55Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alo... [more]
LX12B_MOUSE9.332e-1434.29Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]
LOX5_HUMAN2.079e-1332.43Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]

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Properties
Property NameValue
Genbank descriptionC18007D07Rv Drought1 Citrus clementina cDNA clone C18007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305572 ID=CX305572; Name=CX305572; organism=Citrus clementina; type=EST; length=463bp
GCGGGAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGGCTTG
AAGCCAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATCTCTG
GGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACTACCCTG
ATAAAAGCCTTGTACAATCTGATGAACAGCTCCAAGCTTGGTGGACTGAA
ATTCGAACTGTGGGACACGGTGACAAGAAACATGAACCTTGGTGGCCTGT
CTTGAAAACCCCTAAAGATTTAATTGAAATCATCACAACTATTGTTTGGG
TAACATCTGGTCACCACGCAACTGTTAACTTCGGCCAATACACTTACAGA
GGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCACTGA
AAATCCATCTGATGAACAATGGAAATTCTTCCTTGAAAAACCTGAAAATG
CACTTTTGAATAC
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