CX305572

Overview
NameCX305572
Unique NameCX305572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2006..2468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX_PSEAE (Oleic acid lipoxygenase OS=Pseudomonas aeruginosa GN=lox PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.546e-13
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 3
Query:   21 VEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFP 362
            V+DP+A       + DYP+ +DGL +W+AI+QW  DYV  YY     V +D +L AW  E+  +G G  K   + P+      L+E++T +++  S  HA VNF Q +   Y P
Sbjct:  469 VDDPAA-------LPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG--KVAGFRPITGR-SQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAP 570          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LX12B_HUMAN (Arachidonate 12-lipoxygenase, 12R type OS=Homo sapiens GN=ALOX12B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.049e-13
Identity = 33/105 (31.43%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   69 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            Y + +D L +W+A++++VT+ + +YYP  + V+ D +LQ+W  EI       ++   +   L+T  +LI  +T +++  S  HA VN GQ  +  + PN P + R
Sbjct:  496 YYYRDDSLAVWNALEKYVTEIITYYYPSDAAVEGDPELQSWVQEIFKECLLGRESSGFPRCLRTVPELIRYVTIVIYTCSAKHAAVNTGQMEFTAWMPNFPASMR 600          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOXA_PSEAE (Arachidonate 15-lipoxygenase OS=Pseudomonas aeruginosa GN=loxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.900e-13
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 3
Query:   21 VEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFP 362
            V+DP A       + DYP+ +DGL +W+AI+QW  DYV  YY     V +D +L AW  E+  +G G  K   + P+      L+E++T +++  S  HA VNF Q +   Y P
Sbjct:  469 VDDPLA-------LPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG--KVAGFRPITGR-SQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAP 570          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LX15B_HUMAN (Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=ALOX15B PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.032e-12
Identity = 33/104 (31.73%), Postives = 60/104 (57.69%), Query Frame = 3
Query:   60 IEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRP 371
            I  Y + +DG+ +W A++++V++ +  YYP    VQ D +LQAW  EI + G  +++       L+T + L++ +T +++  S  HA V+ GQ+    + PN P
Sbjct:  468 IPGYYYRDDGMQIWGAVERFVSEIIGIYYPSDESVQDDRELQAWVREIFSKGFLNQESSGIPSSLETREALVQYVTMVIFTCSAKHAAVSAGQFDSCAWMPNLP 571          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.121e-12
Identity = 32/101 (31.68%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   69 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRP 371
            Y + +DG+ +W AI+ +V++ V+ YYP  + V+ D++LQAW  EI + G   ++      +L T + L++ +T +++  S  HA V+  Q+    + PN P
Sbjct:  472 YYYRDDGMQIWSAIRSFVSEIVDIYYPSDASVRDDQELQAWVGEIFSEGFLSQESSGMPSLLDTQEALVQYVTMVIFTCSAKHAAVSASQFDSCVWMPNLP 572          
The following BLAST results are available for this feature:
BLAST of CX305572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
LOX_PSEAE3.546e-1336.84Oleic acid lipoxygenase OS=Pseudomonas aeruginosa ... [more]
LX12B_HUMAN6.049e-1331.43Arachidonate 12-lipoxygenase, 12R type OS=Homo sap... [more]
LOXA_PSEAE7.900e-1336.84Arachidonate 15-lipoxygenase OS=Pseudomonas aerugi... [more]
LX15B_HUMAN1.032e-1231.73Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=... [more]
LX15B_RAT5.121e-1231.68Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionC18007D07Rv Drought1 Citrus clementina cDNA clone C18007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305572 ID=CX305572; Name=CX305572; organism=Citrus clementina; type=EST; length=463bp
GCGGGAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGGCTTG
AAGCCAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATCTCTG
GGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACTACCCTG
ATAAAAGCCTTGTACAATCTGATGAACAGCTCCAAGCTTGGTGGACTGAA
ATTCGAACTGTGGGACACGGTGACAAGAAACATGAACCTTGGTGGCCTGT
CTTGAAAACCCCTAAAGATTTAATTGAAATCATCACAACTATTGTTTGGG
TAACATCTGGTCACCACGCAACTGTTAACTTCGGCCAATACACTTACAGA
GGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCACTGA
AAATCCATCTGATGAACAATGGAAATTCTTCCTTGAAAAACCTGAAAATG
CACTTTTGAATAC
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