CX305584

Overview
NameCX305584
Unique NameCX305584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_LAGLA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix lagotricha GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.509e-25
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP Y F  ++ +++G
Sbjct:  211 MILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTGDDMVIVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_CHICK (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gallus gallus GN=UQCRFS1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.509e-25
Identity = 43/64 (67.19%), Postives = 58/64 (90.62%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            +++VGVCTHLGC+P+ N+GDFGG++CPCHGSHYD SGRIRKGPAP+NLEVP Y F+ ++ +++G
Sbjct:  209 VILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG 272          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_BOVIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus GN=UQCRFS1 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 6.509e-25
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP Y F  ++ +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_AOTAZ (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Aotus azarai GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.509e-25
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP Y F  ++ +++G
Sbjct:  211 MILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSDDLVIVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_MOUSE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus GN=Uqcrfs1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.110e-24
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP Y F  ++ +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPAYEFTSDDVVVVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_SCHPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Schizosaccharomyces pombe GN=rip1 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.894e-24
Identity = 45/64 (70.31%), Postives = 56/64 (87.50%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDISGRIR+GPAP NL +P Y F + +K++IG
Sbjct:  166 LVMIGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRRGPAPLNLAIPAYTF-EGSKIIIG 228          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_PONPY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pongo pygmaeus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.473e-24
Identity = 42/64 (65.62%), Postives = 56/64 (87.50%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPIYEFTSDDMVIVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_THEGE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Theropithecus gelada GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.230e-24
Identity = 41/64 (64.06%), Postives = 56/64 (87.50%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++G+CTHLGC+P+ NAGDFGG++CPCHGSHYD+SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  211 VILIGICTHLGCVPIANAGDFGGYYCPCHGSHYDVSGRIRLGPAPLNLEVPPYEFTSDDMVVVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_RAT (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus norvegicus GN=Uqcrfs1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.230e-24
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP Y F   + +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSGDVVVVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_PANTR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan troglodytes GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.219e-24
Identity = 42/64 (65.62%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
The following BLAST results are available for this feature:
BLAST of CX305584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_LAGLA6.509e-2567.19Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_CHICK6.509e-2567.19Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_BOVIN6.509e-2567.19Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_AOTAZ6.509e-2567.19Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MOUSE1.110e-2467.19Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SCHPO1.894e-2470.31Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PONPY2.473e-2465.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_THEGE3.230e-2464.06Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RAT3.230e-2467.19Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANTR4.219e-2465.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18007E08Rv Drought1 Citrus clementina cDNA clone C18007E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305584 ID=CX305584; Name=CX305584; organism=Citrus clementina; type=EST; length=498bp
TTTTTTTTTTTTTTTTTTTTTTTGCGGCTGAAACATCATCTTTCATGAAC
TTAGATTATTTAACAAAATTTAAGAACCATTCAAGGTGAAAGTGCTCAAC
AAATTTCCAGTTGCACTATTCTCAACTTCAGAATTGCTTTATATGTAAAG
CATAGCTGAATAGCTTAAAGCAAAACAAAATCAATTTGTGGAATCAAATT
TTCCTTTGGTGGAAGAGAGGGGGAAAATAAAAAAAAAAAAGGAAACTATT
ACAACACTCATTCAAAGGGAACTGCTCCAAAAAGATATCCACTATCAATG
ATCACCCAATCAGTAACTTGTTCTCGTCCAAGAAATTGTACATGGGTACC
TCTAGATTGAATGGTGCTGGCCCCTTGCGGATCCTGCCAGATATGTCATA
GTGCGAACCATGGCAGGGGCAGAACCAACCTCCAAAGTCACCAGCATTTG
GTAAAGGAATGCACCCCAAATGTGTGCACACACCAACAACGACCAGCC
back to top