CX305584

Overview
NameCX305584
Unique NameCX305584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_PANPA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan paniscus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.219e-24
Identity = 42/64 (65.62%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_HYLSY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Hylobates syndactylus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.219e-24
Identity = 42/64 (65.62%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_HUMAN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.219e-24
Identity = 42/64 (65.62%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_GORGO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gorilla gorilla gorilla GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.219e-24
Identity = 42/64 (65.62%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_COLPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Colobus polykomos GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.510e-24
Identity = 42/64 (65.62%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVVVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_CERAE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cercopithecus aethiops GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.228e-23
Identity = 42/64 (65.62%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  211 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPPYEFTGDDVVVVG 274          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_RICBR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=petA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.094e-23
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LV +G+CTHLGC+PL N GD+ GWFCPCHGS YD SGR+R+GPAP NL VP Y F+ + K+ IG
Sbjct:  123 LVTIGICTHLGCVPLANQGDYDGWFCPCHGSQYDSSGRVRRGPAPLNLAVPPYTFISDKKIRIG 186          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.572e-23
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LV++GVCTHLGC+P+ + AGDFGGWFCPCHGSHYD SGRIR+GPAP NL +P+  FLD+  + +G
Sbjct:  126 LVMIGVCTHLGCVPIGDGAGDFGGWFCPCHGSHYDTSGRIRRGPAPQNLHIPVAEFLDDTTIKLG 190          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRIL_HUMAN (Cytochrome b-c1 complex subunit Rieske-like protein 1 OS=Homo sapiens GN=UQCRFSL1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.572e-23
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPA  NLEVP Y F  ++ +++G
Sbjct:  220 VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPATLNLEVPTYEFTSDDMVIVG 283          
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.092e-23
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = -3
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LV +G+CTHLGC+PL N G++ GWFCPCHGS YD SGR+R+GPAP NL VP Y F+ + K+ IG
Sbjct:  114 LVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLNLAVPPYTFISDKKIRIG 177          
The following BLAST results are available for this feature:
BLAST of CX305584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_PANPA4.219e-2465.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HYLSY4.219e-2465.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HUMAN4.219e-2465.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_GORGO4.219e-2465.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_COLPO5.510e-2465.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_CERAE1.228e-2365.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RICBR2.094e-2365.63Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE3.572e-2367.69Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRIL_HUMAN3.572e-2364.06Cytochrome b-c1 complex subunit Rieske-like protei... [more]
UCRI_RICFE6.092e-2364.06Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionC18007E08Rv Drought1 Citrus clementina cDNA clone C18007E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305584 ID=CX305584; Name=CX305584; organism=Citrus clementina; type=EST; length=498bp
TTTTTTTTTTTTTTTTTTTTTTTGCGGCTGAAACATCATCTTTCATGAAC
TTAGATTATTTAACAAAATTTAAGAACCATTCAAGGTGAAAGTGCTCAAC
AAATTTCCAGTTGCACTATTCTCAACTTCAGAATTGCTTTATATGTAAAG
CATAGCTGAATAGCTTAAAGCAAAACAAAATCAATTTGTGGAATCAAATT
TTCCTTTGGTGGAAGAGAGGGGGAAAATAAAAAAAAAAAAGGAAACTATT
ACAACACTCATTCAAAGGGAACTGCTCCAAAAAGATATCCACTATCAATG
ATCACCCAATCAGTAACTTGTTCTCGTCCAAGAAATTGTACATGGGTACC
TCTAGATTGAATGGTGCTGGCCCCTTGCGGATCCTGCCAGATATGTCATA
GTGCGAACCATGGCAGGGGCAGAACCAACCTCCAAAGTCACCAGCATTTG
GTAAAGGAATGCACCCCAAATGTGTGCACACACCAACAACGACCAGCC
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