CX305587

Overview
NameCX305587
Unique NameCX305587
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig418 contig Ccv1_Contig418:1..434. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305587 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSS1 (Chaperone protein dnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  255 YEILGIQAGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 446
            YE+LG+Q  A+  EIK A+R+LAR  HPDV   ++  ++  KF +++EAYE LSDP+KR+ YDR
Sbjct:    8 YEVLGVQRNASQDEIKKAFRRLARQYHPDV---NKAPDAEAKFKEINEAYEVLSDPEKRSMYDR 68          
BLAST of CX305587 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSCS (Chaperone protein dnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  255 YEILGIQAGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 446
            YE+LG+Q  A+  EIK A+R+LAR  HPDV   ++  ++  KF +++EAYE LSDP+KR+ YDR
Sbjct:    8 YEVLGVQRNASQDEIKKAFRRLARQYHPDV---NKAPDAEAKFKEINEAYEVLSDPEKRSMYDR 68          
BLAST of CX305587 vs. ExPASy Swiss-Prot
Match: DNAJ_RHILO (Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  255 YEILGIQAGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 446
            YE LG+Q GA  +E+K+A+RKLA   HPD      + +  +KF +++EAYETL DP+KRA YDR
Sbjct:    6 YETLGVQKGADEKELKSAFRKLAMQFHPD--RNPGDHSCEHKFKEINEAYETLKDPQKRAAYDR 67          
BLAST of CX305587 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSW (Chaperone protein dnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 3
Query:  255 YEILGIQAGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 446
            YEILG+   AT +EIK AYRKL++  HPD+   ++  ++A KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEILGVSKNATKEEIKKAYRKLSKKYHPDI---NKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
BLAST of CX305587 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOKA (Chaperone protein dnaJ OS=Geobacillus kaustophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  255 YEILGIQAGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 446
            YEILG+   AT  EIK AYRKL++  HPDV   ++  ++A KF ++ EAYE LSD +KRA YDR
Sbjct:    7 YEILGVSKNATKDEIKKAYRKLSKQYHPDV---NKAPDAAEKFKEIKEAYEVLSDDEKRARYDR 67          
BLAST of CX305587 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTR (Chaperone protein dnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 3
Query:  255 YEILGIQAGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 446
            YEILG+   AT +EIK AYRKL++  HPD+   ++  ++A KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEILGVSKNATKEEIKKAYRKLSKKYHPDI---NKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
BLAST of CX305587 vs. ExPASy Swiss-Prot
Match: DNAJ_SYMTH (Chaperone protein dnaJ OS=Symbiobacterium thermophilum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  255 YEILGIQAGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 446
            YEILG+   AT  EIK A+R LAR  HPD  A   + ++A KF +++EAY+ LSDP+KRA YD+
Sbjct:   10 YEILGVPRNATEAEIKKAFRNLARKYHPD--ANKDDPDAAEKFKEINEAYQVLSDPEKRARYDQ 71          
BLAST of CX305587 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMO (Chaperone protein dnaJ OS=Listeria monocytogenes GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  255 YEILGIQAGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 446
            YE+LGI   A+  EIK AYRKL++  HPD+   ++   +  KF ++ EAYE LSDP+KRA YD+
Sbjct:    7 YEVLGISKSASADEIKKAYRKLSKQYHPDI---NKEAGADEKFKEISEAYEALSDPQKRAQYDQ 67          
BLAST of CX305587 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMH (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  255 YEILGIQAGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 446
            YE+LGI   A+  EIK AYRKL++  HPD+   ++   +  KF ++ EAYE LSDP+KRA YD+
Sbjct:    7 YEVLGISKSASADEIKKAYRKLSKQYHPDI---NKEAGADEKFKEISEAYEALSDPQKRAQYDQ 67          
BLAST of CX305587 vs. ExPASy Swiss-Prot
Match: DNAJ_LISIN (Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  255 YEILGIQAGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 446
            YE+LGI   A+  EIK AYRKL++  HPD+   ++   +  KF ++ EAYE LSDP+KRA YD+
Sbjct:    7 YEVLGISKSASADEIKKAYRKLSKQYHPDI---NKEAGADEKFKEISEAYEALSDPQKRAQYDQ 67          
The following BLAST results are available for this feature:
BLAST of CX305587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
DNAJ_ROSS13.188e-1151.56Chaperone protein dnaJ OS=Roseiflexus sp. (strain ... [more]
DNAJ_ROSCS3.188e-1151.56Chaperone protein dnaJ OS=Roseiflexus castenholzii... [more]
DNAJ_RHILO3.188e-1151.56Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ P... [more]
DNAJ_GEOSW3.188e-1151.56Chaperone protein dnaJ OS=Geobacillus sp. (strain ... [more]
DNAJ_GEOKA3.188e-1154.69Chaperone protein dnaJ OS=Geobacillus kaustophilus... [more]
DNAJ_BACTR3.188e-1151.56Chaperone protein dnaJ OS=Bacillus thermoglucosida... [more]
DNAJ_SYMTH4.163e-1153.13Chaperone protein dnaJ OS=Symbiobacterium thermoph... [more]
DNAJ_LISMO4.163e-1150.00Chaperone protein dnaJ OS=Listeria monocytogenes G... [more]
DNAJ_LISMH4.163e-1150.00Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISIN4.163e-1150.00Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ... [more]

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Properties
Property NameValue
Genbank descriptionC18007E11Rv Drought1 Citrus clementina cDNA clone C18007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305587 ID=CX305587; Name=CX305587; organism=Citrus clementina; type=EST; length=452bp
GCGGGGGATACTACTCTCATCTTCAAAACAAAACACAAGAAGTAATCTAA
TCATCGATTCAATCCATCATGTCTACTCTTGCATCTTCAGCCCATCTGAT
TGGCCCGGGATTTATCACCAACGAGACTCATTCACAATCACAGCCCACGT
CTGTCAAATTCCGCCCACTTCGCGTATCGGCATCGGCTTGCGCCTCAACG
GCGGAGAGAACAAGAACCCATCATCACATTACTTCTCCTGGACCCGGCTC
ACTCTACGAAATCCTGGGGATTCAGGCGGGCGCCACATGTCAGGAAATCA
AGACTGCTTATCGGAAATTAGCAAGAGTTTTGCACCCGGATGTTGCCGCT
AAGAGTCAAAATGAGAATTCAGCATATAAGTTCATGAAATTACACGAAGC
TTACGAAACTCTATCTGACCCCAAGAAGCGTGCGGACTACGATCGTACCC
TT
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