CX305778

Overview
NameCX305778
Unique NameCX305778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9835 contig Ccv1_Contig9835:155..510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305778 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.514e-27
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 2 
Query:    5 GMGLDGSERFLRNMGCQQALGRRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 316
            G  L+    +       + L  R+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G G  QG L V+Y+FV+C D
Sbjct:   96 GWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199
[Close]
BLAST of CX305778 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.514e-27
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:   32 FLRNMGCQQALGRRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 316
            F       + L  R KYGWTAFC   GP GQ +CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:   13 FCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107
The following BLAST results are available for this feature:
BLAST of CX305778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
WIN1_SOLTU1.514e-2753.85Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
PR4_PRUPE1.514e-2758.95Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionC18010B07Rv Drought1 Citrus clementina cDNA clone C18010B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305778 ID=CX305778; Name=CX305778; organism=Citrus clementina; type=EST; length=355bp
GCGGGGGATGGGACTTGACGGCAGCGAGCGCTTTCTGCGCAACATGGGAT
GCCAACAAGCCCTTGGCCGGCGCCAGAAATATGGCTGGACTGCTTTCTGT
CATTCGGGCGGACCCATTGGACAAGCTGCTTGTGGCAGGTGCTTAAGGGT
CACAAACAGTGGTACAGGAGCCCAACAAATTGTGAGAATTGTTGATCAGT
GTGCCAATGGAGGCTTAGATTTGGACGAAGGAGTGTTCAAGAAATTGGAC
ACCAATGGAATAGGCTATCAACAAGGCTTCCTTACTGTCAGCTACGAGTT
TGTGAACTGCAATGATTAAAGCACCATCTATAATTCCATGATCGATCGAA
GCTTA
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