CX305780

Overview
NameCX305780
Unique NameCX305780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length308
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig865 contig Ccv1_Contig865:1..308. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.215e-26
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query:   94 NFPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASR 303
            +FPVIN+ N+NG  R ++L +IN+ACENWGFFELVNHGI  E MD VE+LTK HYRKCMEQRFKE+VAS+
Sbjct:    4 DFPVINMNNLNGESRVSVLNQINDACENWGFFELVNHGISHELMDKVEKLTKEHYRKCMEQRFKEMVASK 73          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.954e-25
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   88 VENFPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASR 303
            +++FPVIN+E + G ERAA ++ IN+ACENWGFFELVNH I  E MD VERLTK HY+KCMEQRFKEL+AS+
Sbjct:    1 MDSFPVINMEKLEGQERAATMKLINDACENWGFFELVNHSIPVELMDEVERLTKEHYKKCMEQRFKELMASK 72          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.451e-24
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   97 FPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASR 303
            FPV++L  +NG ERAA LEKIN+ACENWGFFELVNHG+  E +DTVE++TK HY+K MEQRFKE+VA++
Sbjct:    4 FPVVDLSLVNGEERAATLEKINDACENWGFFELVNHGMSTELLDTVEKMTKDHYKKTMEQRFKEMVAAK 72          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.508e-24
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   97 FPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASR 303
            FPV++++ ING ERAA LEKIN+ACENWGFFELVNHGI  E +DTVE++ K HY+K MEQRFKE+VA++
Sbjct:    4 FPVVDMDLINGEERAATLEKINDACENWGFFELVNHGISTELLDTVEKMNKDHYKKTMEQRFKEMVAAK 72          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.689e-24
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   88 VENFPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASR 303
            +E+FP+INLE +NG ERA  +EKI +ACENWGFFE VNHGI  E +D VE++TK HY+KCME+RFKE + +R
Sbjct:    1 MESFPIINLEKLNGEERAITMEKIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEERFKESIKNR 72          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.922e-23
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   97 FPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASR 303
            FP+INLENIN   RA ILE+I +AC+NWGFFELVNHGI  EF+D VE++T+ HY+KCME+RFKE V S+
Sbjct:    4 FPIINLENINDDGRAKILEQIEDACQNWGFFELVNHGIPHEFLDMVEKMTRDHYKKCMEERFKETVLSK 72          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.110e-22
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   88 VENFPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASR 303
            +ENFP++++  +N  +R + +E I +ACENWGFFE VNHGI  E MDTVE+LTK HY+KCMEQRFKE+VA++
Sbjct:    1 MENFPIVDMGKLNTEDRKSTMELIKDACENWGFFECVNHGISIEMMDTVEKLTKEHYKKCMEQRFKEMVATK 72          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.270e-18
Identity = 38/76 (50.00%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   85 DVENFPVINLE---NINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASR 303
            ++ NFP+I++E   N NG ER+ +L++I +AC NWGFF++VNH +  E MD VER+TK HY+K  EQ+FK++V ++
Sbjct:    3 NIVNFPIIDMEKLNNYNGVERSLVLDQIKDACHNWGFFQVVNHSLSHELMDKVERMTKEHYKKFREQKFKDMVQTK 78          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.830e-18
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   97 FPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVA 297
            FPVIN+E + G ER A +E++++ACENWGFFE++NHGI  E MD VE++TK HY++  EQRF E  +
Sbjct:    7 FPVINMELLAGEERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFAS 73          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.830e-18
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   97 FPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVA 297
            FPVIN+E + G ER A +E++++ACENWGFFE++NHGI  E MD VE++TK HY++  EQRF E  +
Sbjct:    7 FPVINMELLAGEERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFAS 73          
The following BLAST results are available for this feature:
BLAST of CX305780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ACCO3_CUCME8.215e-2671.431-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO_PERAE6.954e-2569.441-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO1_MALDO3.451e-2469.571-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCO2_MALDO4.508e-2469.571-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCO1_ARATH7.689e-2463.891-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
ACCO1_CUCME2.922e-2368.121-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO_PEA1.110e-2261.111-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO_DIACA1.270e-1850.00Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
ACCO1_ORYSJ2.830e-1856.721-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSI2.830e-1856.721-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC18010B09Rv Drought1 Citrus clementina cDNA clone C18010B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305780 ID=CX305780; Name=CX305780; organism=Citrus clementina; type=EST; length=308bp
GCGGGGACTAATTAACAAGCTCACAAACACATACACAAACCCAAACACTC
ACAAACACACAGCTTGTTAAAGAAAGAATTCAGAGATGTGGAGAACTTCC
CCGTTATCAACTTGGAGAACATCAATGGTGCTGAAAGAGCGGCTATCTTG
GAGAAGATCAACGAGGCCTGTGAGAACTGGGGCTTCTTTGAGCTGGTGAA
TCATGGAATTGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGG
CGCATTACAGAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGC
AGGGCACT
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