CX305780

Overview
NameCX305780
Unique NameCX305780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length308
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig865 contig Ccv1_Contig865:1..308. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.337e-17
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   94 NFPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVA 297
            +FPVIN+E + G++R A +  + +ACENWGFFEL+NHGI  E M+ VE + K HYR+  EQRFKE  +
Sbjct:    5 SFPVINMELLQGSQRPAAMALLRDACENWGFFELLNHGISHELMNRVEAVNKEHYRRFREQRFKEFAS 72          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.649e-16
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   97 FPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASR 303
            FPV++L  + G ER   +  IN+ACENWGFFE+VNHG+  + MD  E++TK HY+  MEQ+F +++ S+
Sbjct:    7 FPVVDLSKLIGEERDQTMALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQKFNDMLKSK 75          
BLAST of CX305780 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.901e-16
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   94 NFPVINLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVA 297
            +FPVIN+E + G++R A +  + +ACENWG +EL+NHGI  E M+ VE + K HYR+  EQRFKE  +
Sbjct:    5 SFPVINMELLQGSQRPAAMALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEFAS 72          
The following BLAST results are available for this feature:
BLAST of CX305780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ACCO2_DORSP5.337e-1754.411-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO1_BRAJU2.649e-1649.281-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO1_DORSP5.901e-1651.471-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]

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Properties
Property NameValue
Genbank descriptionC18010B09Rv Drought1 Citrus clementina cDNA clone C18010B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305780 ID=CX305780; Name=CX305780; organism=Citrus clementina; type=EST; length=308bp
GCGGGGACTAATTAACAAGCTCACAAACACATACACAAACCCAAACACTC
ACAAACACACAGCTTGTTAAAGAAAGAATTCAGAGATGTGGAGAACTTCC
CCGTTATCAACTTGGAGAACATCAATGGTGCTGAAAGAGCGGCTATCTTG
GAGAAGATCAACGAGGCCTGTGAGAACTGGGGCTTCTTTGAGCTGGTGAA
TCATGGAATTGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGG
CGCATTACAGAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGC
AGGGCACT
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