CX306020

Overview
NameCX306020
Unique NameCX306020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.850e-15
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTEQERI 239
            +DGG+RRGTDV KALA GA AV IGRP+++GL+  G++GV +V+ +L  E +L MALTG  ++  I  + +  + + I
Sbjct:  309 LDGGIRRGTDVLKALAFGANAVCIGRPIIWGLSTGGKDGVLKVLNLLNSELQLAMALTGITNISDINNSIIWDQNKYI 386          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.951e-14
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHIT 206
            +DGGVRRGTDV KAL LGA+ V +GRP +Y +++ G+ GV + I++LKDE E+ M L G   ++ +T
Sbjct:  467 VDGGVRRGTDVLKALCLGAKGVGLGRPFLYAMSSYGDKGVTKAIQLLKDEIEMNMRLLGVNKIEELT 533          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.326e-13
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHI 203
            +DGGVRRGTDV KAL LGA+ V +GRP +Y  +  G NGV + IE+L+DE E++M L G  S+  +
Sbjct:  488 VDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAEL 553          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVK 197
            D GVR G D+ KALALGA+ VLIGRP VYGLA +G +GV  VI  L  + ELT+ L+G  SVK
Sbjct:  332 DSGVRSGADIAKALALGAKMVLIGRPYVYGLALEGSSGVSHVIRCLLGDLELTLHLSGIVSVK 394          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_BARHE (L-lactate dehydrogenase [cytochrome] OS=Bartonella henselae GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 3
Query:    6 MDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITR 209
            +D GVR G DV + +A GA AV+IGR  VY LAA GE GV  +I++  +E  + M LTG  ++K ITR
Sbjct:  305 VDSGVRSGLDVVRMIAQGADAVMIGRAFVYALAAAGEKGVAHLIDLFANEMRVAMTLTGVRAIKEITR 372          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.274e-12
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG  S+  I+ + +  E
Sbjct:  306 DSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLVRE 378          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.274e-12
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG  S+  I+ + +  E
Sbjct:  306 DSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLVRE 378          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.274e-12
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG  S+  I+ + +  E
Sbjct:  306 DSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLVRE 378          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.274e-12
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG  S+  I+ + +  E
Sbjct:  306 DSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLVRE 378          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_ENTS8 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.274e-12
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITR 209
            D G+R G DV + +ALGA +VL+GR  +Y LA  GE GV  ++ +++ E  + M LTG  S+K ITR
Sbjct:  306 DSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGEKGVANLLNLIEKEMRVAMTLTGAKSIKEITR 372          
The following BLAST results are available for this feature:
BLAST of CX306020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
HAOX_DICDI1.850e-1547.44Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
CYB2_HANAN5.951e-1450.75Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
CYB2_YEAST1.326e-1353.03Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
YKN3_SCHPO3.857e-1360.32Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]
LLDD_BARHE4.265e-1250.00L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_PSEAE7.274e-1245.21L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAB7.274e-1245.21L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA87.274e-1245.21L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA77.274e-1245.21L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ENTS87.274e-1246.27L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]

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Properties
Property NameValue
Genbank descriptionC18013A08Rv Drought1 Citrus clementina cDNA clone C18013A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306020 ID=CX306020; Name=CX306020; organism=Citrus clementina; type=EST; length=432bp
GCGGGATGGATGGAGGAGTGCGGCGAGGAACAGATGTTTTCAAGGCATTG
GCCCTCGGTGCACAAGCTGTACTTATTGGAAGGCCTGTAGTCTACGGCCT
TGCTGCAAAAGGGGAAAATGGGGTGAGACGCGTCATCGAAATGCTGAAGG
ATGAGTTTGAGTTGACCATGGCCCTTACTGGCTGTCCTAGTGTGAAACAT
ATTACCAGGAACCATGTGAGAACTGAGCAGGAGAGAATCCATTCGATGCT
GTAATATTATTCTGTTGCAGAAATGTCTAAGGGTGCGTTTGGCACGCTCT
ATTGTATTATGTTGTATTGTATTATTTTAATACAGTTATATTGTATTATT
TTGTATTGTATTAGTATTGAATTATAATAATATTGTACAACGTTTGGTAT
TACGTTATACTGTATTAATTTTTAATTATATC
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