CX306020

Overview
NameCX306020
Unique NameCX306020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPK (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain KT2440) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            D G+R G DV + +ALGA  VLIGR  +Y LA  G+ GV+ ++E+ + E  + M LTG  S+  ITR+ +  E
Sbjct:  306 DSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLVRE 378          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPG (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain GB-1) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            D G+R G DV + +ALGA  VLIGR  +Y LA  G+ GV+ ++E+ + E  + M LTG  S+  ITR+ +  E
Sbjct:  306 DSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLVRE 378          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_PSEP1 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            D G+R G DV + +ALGA  VLIGR  +Y LA  G+ GV+ ++E+ + E  + M LTG  S+  ITR+ +  E
Sbjct:  306 DSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLVRE 378          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_CAUSK (L-lactate dehydrogenase [cytochrome] OS=Caulobacter sp. (strain K31) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRN 212
            DGGVR G DV + LALGA+ VL+GR  VY LAA+G  GV +++++++ E  + MALTG  ++  I R+
Sbjct:  306 DGGVRSGLDVVRMLALGAKGVLLGRAFVYALAARGGPGVSQLLDLIEKEMRVAMALTGVNTLDQIDRS 373          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCR (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHI 203
            DGGVR G DV + LALGA+ VLIGR   Y LAA+GE GV ++++++  E  + MALTG   V  I
Sbjct:  306 DGGVRSGLDVVRMLALGARGVLIGRAYAYALAARGEAGVTQLLDLIDKEMRVAMALTGVRDVASI 370          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCN (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHI 203
            DGGVR G DV + LALGA+ VLIGR   Y LAA+GE GV ++++++  E  + MALTG   V  I
Sbjct:  306 DGGVRSGLDVVRMLALGARGVLIGRAYAYALAARGEAGVTQLLDLIDKEMRVAMALTGVRDVASI 370          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_PSEE4 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas entomophila (strain L48) GN=lldD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            D G+R G DV + +ALGA  VLIGR  +Y LA  GE GV+ ++ + + E  + M LTG  S+  ITR+ +  E
Sbjct:  306 DSGIRSGLDVVRMIALGADTVLIGRAFLYALATHGEAGVKNLLALFEKEMRVAMVLTGAKSISEITRDSLVRE 378          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRN 212
            D G+R G DV + LALGA+ VL+GR   Y LA  G+ GV  ++++++ E  + MALTG  S+  ITR+
Sbjct:  306 DSGIRTGLDVVRMLALGAKGVLLGRAFAYALATHGQAGVANLLDLIEKEMRVAMALTGARSIAEITRD 373          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_BART1 (L-lactate dehydrogenase [cytochrome] OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=lldD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHIT 206
            D GVR G DV + +A GA AV+IGR  VY LAA GE GV  ++++  +E  + M LTG  ++K IT
Sbjct:  306 DSGVRSGLDVVRMIAQGADAVMIGRAFVYALAAAGEKGVAHLLDLFANEMRVAMTLTGAQTLKEIT 371          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_BARQU (L-lactate dehydrogenase [cytochrome] OS=Bartonella quintana GN=lldD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHIT 206
            D GVR G DV + +A GA AV+IGR  +Y LAA GE GV  ++++  +E  + M LTG  +VK IT
Sbjct:  306 DSGVRSGLDVVRMIAQGADAVMIGRAFIYALAAAGEKGVMHLLDLFANEMRVAMTLTGVRAVKEIT 371          
The following BLAST results are available for this feature:
BLAST of CX306020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LLDD_PSEPK1.241e-1143.84L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEPG1.241e-1143.84L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEP11.241e-1143.84L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_CAUSK1.241e-1148.53L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_CAUCR1.621e-1152.31L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_CAUCN1.621e-1152.31L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_PSEE42.764e-1143.84L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_AZOC52.764e-1145.59L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD_BART13.610e-1148.48L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_BARQU3.610e-1148.48L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18013A08Rv Drought1 Citrus clementina cDNA clone C18013A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306020 ID=CX306020; Name=CX306020; organism=Citrus clementina; type=EST; length=432bp
GCGGGATGGATGGAGGAGTGCGGCGAGGAACAGATGTTTTCAAGGCATTG
GCCCTCGGTGCACAAGCTGTACTTATTGGAAGGCCTGTAGTCTACGGCCT
TGCTGCAAAAGGGGAAAATGGGGTGAGACGCGTCATCGAAATGCTGAAGG
ATGAGTTTGAGTTGACCATGGCCCTTACTGGCTGTCCTAGTGTGAAACAT
ATTACCAGGAACCATGTGAGAACTGAGCAGGAGAGAATCCATTCGATGCT
GTAATATTATTCTGTTGCAGAAATGTCTAAGGGTGCGTTTGGCACGCTCT
ATTGTATTATGTTGTATTGTATTATTTTAATACAGTTATATTGTATTATT
TTGTATTGTATTAGTATTGAATTATAATAATATTGTACAACGTTTGGTAT
TACGTTATACTGTATTAATTTTTAATTATATC
back to top