CX306020

Overview
NameCX306020
Unique NameCX306020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 29/79 (36.71%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTEQERIHS 245
            D G+R G DV + +ALGA +VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S++ I+R+ +    E + +
Sbjct:  306 DSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNLIEKEMKVAMTLTGAKSIREISRDSLVQNAEALQT 384          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_ENT38 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sp. (strain 638) GN=lldD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTEQERIHSML 251
            D G+R G DV + +ALGA +VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  ++  I+++ +  E  RI S L
Sbjct:  306 DSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGQAGVANLLNLIEKEMKVAMTLTGAKTISEISKDSLVQELSRIPSGL 386          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_XANC5 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lldD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.158e-11
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHV-RTEQERIHSM 248
            D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG  S+  I+ + + R  +ER  ++
Sbjct:  306 DSGIRSGLDVVRMLALGADAVLLGRAFVYALAAAGQAGVENLLTLIEKEMRVAMTLTGTHSIAEISADALSRVTRERAETI 386          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSM (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.158e-11
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTEQERIHSML*YYSVAEMSKG 284
            D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  S+  IT++ +  E  +  +     ++A M+KG
Sbjct:  306 DSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQELSKAPAA----ALAPMAKG 393          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_ERWCT (L-lactate dehydrogenase [cytochrome] OS=Erwinia carotovora subsp. atroseptica GN=lldD PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.043e-11
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNH-VRTEQERIHSM 248
            D G+R G DV + +ALGA  V++GR  VY LAA GE GV  ++ +++ E  + M LTG  S+  IT +  V+  Q R+  +
Sbjct:  306 DSGIRSGLDVVRMIALGADGVMLGRAFVYALAAAGEAGVVNLLNLIEKEMRVAMTLTGAKSIADITSDSLVQVTQRRLDGL 386          
BLAST of CX306020 vs. ExPASy Swiss-Prot
Match: LLDD_CITK8 (L-lactate dehydrogenase [cytochrome] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=lldD PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.043e-11
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 3
Query:    9 DGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 227
            D G+R G DV + +ALGA +VL+GR  +Y LA  G+ GV  ++++++ E ++ M LTG  S+  I+R+ +  E
Sbjct:  306 DSGIRNGLDVVRMIALGADSVLLGRAYLYALATAGQAGVANLLDLIEKEMKVAMTLTGAKSISEISRDSLVQE 378          
The following BLAST results are available for this feature:
BLAST of CX306020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LLDD_KLEP74.715e-1136.71L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_ENT384.715e-1138.27L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_XANC56.158e-1141.98L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_ECOSM6.158e-1135.87L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ERWCT8.043e-1140.74L-lactate dehydrogenase [cytochrome] OS=Erwinia ca... [more]
LLDD_CITK88.043e-1139.73L-lactate dehydrogenase [cytochrome] OS=Citrobacte... [more]

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Properties
Property NameValue
Genbank descriptionC18013A08Rv Drought1 Citrus clementina cDNA clone C18013A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306020 ID=CX306020; Name=CX306020; organism=Citrus clementina; type=EST; length=432bp
GCGGGATGGATGGAGGAGTGCGGCGAGGAACAGATGTTTTCAAGGCATTG
GCCCTCGGTGCACAAGCTGTACTTATTGGAAGGCCTGTAGTCTACGGCCT
TGCTGCAAAAGGGGAAAATGGGGTGAGACGCGTCATCGAAATGCTGAAGG
ATGAGTTTGAGTTGACCATGGCCCTTACTGGCTGTCCTAGTGTGAAACAT
ATTACCAGGAACCATGTGAGAACTGAGCAGGAGAGAATCCATTCGATGCT
GTAATATTATTCTGTTGCAGAAATGTCTAAGGGTGCGTTTGGCACGCTCT
ATTGTATTATGTTGTATTGTATTATTTTAATACAGTTATATTGTATTATT
TTGTATTGTATTAGTATTGAATTATAATAATATTGTACAACGTTTGGTAT
TACGTTATACTGTATTAATTTTTAATTATATC
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