CX306022

Overview
NameCX306022
Unique NameCX306022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX306022 vs. ExPASy Swiss-Prot
Match: ASNH_MYCBO (Putative asparagine synthetase [glutamine-hydrolyzing] OS=Mycobacterium bovis GN=asnB PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.656e-13
Identity = 55/159 (34.59%), Postives = 70/159 (44.03%), Query Frame = 3 
Query:   72 MCGILAVLGC-----SDDSQAKRVRVLELSRRLKHRGPDWSGLYQ-----HGDFYLAHQRLAIIDPASGDQPLY----NEDKKIVVTVNGEIYNHEALRDRL-TNHK--FRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGI 497
            MCG+LA +         +       +   S  ++HRGPD SG +       G       RL+IID A   QPL         + V+  NGEIYN+  LRD L T H   F T  D + I   Y  +G   +  L GMF+F L DT       ARD  GI
Sbjct:    1 MCGLLAFVAAPAGAAGPEGADAASAIARASHLMRHRGPDESGTWHAVDGASGGVVFGFNRLSIIDIAHSHQPLRWGPPEAPDRYVLVFNGEIYNYLELRDELRTQHGAVFATDGDGEAILAGYHHWGTEVLQRLRGMFAFALWDTVTRELFCARDPFGI 159
The following BLAST results are available for this feature:
BLAST of CX306022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ASNH_MYCBO2.656e-1334.59Putative asparagine synthetase [glutamine-hydrolyz... [more]

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Properties
Property NameValue
Genbank descriptionC18013A10Rv Drought1 Citrus clementina cDNA clone C18013A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306022 ID=CX306022; Name=CX306022; organism=Citrus clementina; type=EST; length=504bp
TTTTCTTTTTTTCCTTATCATCCAGAATCCCTGTTGTTTAATTTTCACTT
TTGCCATCAAACTGACCAAAAATGTGTGGCATACTTGCTGTTCTCGGTTG
CTCTGATGACTCTCAGGCCAAAAGGGTCCGAGTTCTTGAGCTCTCTCGCA
GATTGAAGCATCGCGGTCCGGACTGGAGTGGACTGTATCAGCATGGAGAC
TTTTATTTGGCTCATCAACGGCTGGCTATCATTGATCCTGCTTCTGGTGA
TCAACCTCTCTACAATGAAGACAAGAAGATTGTTGTCACCGTGAATGGAG
AAATTTACAATCATGAAGCTCTCAGGGATCGTTTGACTAATCATAAGTTC
CGAACTGGCAGTGATTGTGATGTTATTGCCCATCTGTATGAGGAGTATGG
GGAAAATTTTGTGGACATGTTGGATGGGATGTTTTCATTTGTGCTTTTGG
ATACCCGCGACAATAGCTTCATTGTTGCCCGTGATGCCATTGGAATCACC
TCTC
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