CX306023

Overview
NameCX306023
Unique NameCX306023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 7.586e-52
Identity = 98/163 (60.12%), Postives = 116/163 (71.17%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC    K +GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSA+W WMT Q PKPSCH+VII  W+P + D
Sbjct:   96 CQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSAD 255          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 9.907e-52
Identity = 99/158 (62.66%), Postives = 114/158 (72.15%), Query Frame = 3
Query:   18 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            FY+Y+AFI AA++F  FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    K +GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSAIW WMT Q PKPSCH+VII  W+P A D
Sbjct:  105 FYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAAD 259          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 6.422e-51
Identity = 92/161 (57.14%), Postives = 108/161 (67.08%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPNYPCRG--KCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF RE   ++       +PC    + YGRGPIQ+SWNYNY +C           NNPDL+ATDPV+SFK+A+W WMT Q PKPSCH+VI   W P + D
Sbjct:   89 CQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQC--GRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSAD 247          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 8.387e-51
Identity = 97/163 (59.51%), Postives = 113/163 (69.33%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G    DYC P+  +PC    K +GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFK+A+W WMT Q PKPSCH+VII  W P + D
Sbjct:  100 CQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERG-NPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSAD 259          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 4.162e-50
Identity = 96/158 (60.76%), Postives = 111/158 (70.25%), Query Frame = 3
Query:   18 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            FY+Y+AF+ AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    K +GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSAIW WMT Q PKPSCH+VI   W+P   D
Sbjct:   99 FYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGAD 253          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 4.162e-50
Identity = 97/163 (59.51%), Postives = 110/163 (67.48%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCRG--KCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CP + FYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYC+ RE G +   YC P+  +PC    K YGRGPIQ+S+NYNY +            NNPDL+ATD V+SFK+A W WMT Q PKPSCH VI   W P   D
Sbjct:   86 CPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQG-SPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQA--GKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGAD 245          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 5.436e-50
Identity = 97/158 (61.39%), Postives = 111/158 (70.25%), Query Frame = 3
Query:   18 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    K +GRGPIQ+S NYNY  C           NNPDL+ATD V+SFKSAIW WMT Q PKPSCH+VI   W+P   D
Sbjct:   95 FYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVD 249          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.582e-49
Identity = 96/158 (60.76%), Postives = 110/158 (69.62%), Query Frame = 3
Query:   18 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            FY+Y+AFI AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    K +GRGPIQ+S NYNY  C           NNPDL+ATD V+SFKSAIW WMT Q PKPSCH+VI   W+P   D
Sbjct:   95 FYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGAD 249          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.066e-49
Identity = 95/158 (60.13%), Postives = 110/158 (69.62%), Query Frame = 3
Query:   18 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G +  DYC P+  +PC    K +GRGPIQ+S NYNY  C           NNPDL+ATD ++SFKSAIW WMT Q PKPSCH+VI   W+P   D
Sbjct:   93 FYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQG-SPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTD 247          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 2.698e-49
Identity = 91/164 (55.49%), Postives = 114/164 (69.51%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPANDV 482
            CPAR FYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYCF  E+G A++ YC P+  +PC    K +GRGPIQLS+NYNY              NNP+L+A+DPV+SFK+A+W WMT Q PKPSCH+VI  +W P + D+
Sbjct:  107 CPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIG-ATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDI 267          
The following BLAST results are available for this feature:
BLAST of CX306023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_TOBAC7.586e-5260.12Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI4_SOLTU9.907e-5262.66Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_PEA6.422e-5157.14Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_SOLTU8.387e-5159.51Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIC_SOLLC4.162e-5060.76Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIB_VITVI4.162e-5059.51Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI1_SOLTU5.436e-5061.39Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU1.582e-4960.76Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU2.066e-4960.13Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI9_ORYSJ2.698e-4955.49Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC18013A11Rv Drought1 Citrus clementina cDNA clone C18013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306023 ID=CX306023; Name=CX306023; organism=Citrus clementina; type=EST; length=485bp
GATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCC
AAAGCTTTTCCAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAG
AGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGAT
GGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGG
GAAGTTGGCGTTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCG
AGGGAAGTGCTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATT
ACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAAT
CCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTG
GTCCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTA
TCGACGAATGGAAACCACCAGCAAATGACGTAAAC
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