CX306023

Overview
NameCX306023
Unique NameCX306023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.524e-49
Identity = 96/163 (58.90%), Postives = 111/163 (68.10%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYC--DPNYPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYC+ RE G   S YC     +PC    K YGRGPIQ+S+NYNY  C           NNPDL+AT+ V+SFKSAIW WMTAQ PKPSCH+VI   W P A D
Sbjct:  106 CQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPS-YCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPC--GRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAAD 265          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 5.088e-48
Identity = 95/163 (58.28%), Postives = 111/163 (68.10%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR-GKC-YGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C A+ FYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYCF +E G A+S+YC P+  +PC  GK  YGRGPIQLS NYNY               NPDL+ATDP +SFK+A+W WMTAQ PKPS H VI  +W P   D
Sbjct:  101 CQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTD 260          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 6.645e-48
Identity = 94/163 (57.67%), Postives = 109/163 (66.87%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C A+ FYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYCF +E G ASSDYC P+  +PC    + YGRGPIQLS NYNY               NPDL+ATD  + FK+AIW WMTAQPPKPS H VI  +W P   D
Sbjct:   46 CQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGAD 205          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.480e-47
Identity = 92/163 (56.44%), Postives = 110/163 (67.48%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C A+ FYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYCF +E G A++DYC P+  +PC    + YGRGPIQLS NYNY               NPDL+ATDP +SFK+A+W WMTAQ PKPS H VI  +W P   D
Sbjct:   46 CQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-AAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGAD 205          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.933e-47
Identity = 90/164 (54.88%), Postives = 107/164 (65.24%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGVASSDYC--DPNYPCRG--KCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYCF  E  G   SDYC     +PC    K YGRGPIQ+S+NYNY              +NPDL+A+D  +SFK+A W WMT Q PKPSCH V+  +W P  ND
Sbjct:  100 CPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGND 261          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 186.808 bits (473), Expect = 4.307e-47
Identity = 94/163 (57.67%), Postives = 109/163 (66.87%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR-GKC-YGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C A+ FYTYDAF+ AA AF  FG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYCF +E G A+S+YC P+  +PC  GK  YGRGPIQLS NYNY               NPDL+ATDP +SFK+A+W WMTAQ PKPS H VI  +W P   D
Sbjct:   98 CQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTD 257          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.253e-46
Identity = 87/163 (53.37%), Postives = 106/163 (65.03%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCD--PNYPCRG--KCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C A+ FYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYCF  E    +  YC+  P +PC    K YGRGPIQ+++NYNY              NNPDL+A+D  +SFK+A W WMT Q PKPSCH VI  +W P A+D
Sbjct:   97 CAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADD 257          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.253e-46
Identity = 91/163 (55.83%), Postives = 108/163 (66.26%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN--YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPAR FYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYCF +E     SDYC P+  +PC    K YGRGPIQLS+N+NY              +NPDL+ATD  +SFK+A+W WMT Q  KPS H+VI   W P   D
Sbjct:  110 CPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQN-PPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPAD 269          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.061e-45
Identity = 89/163 (54.60%), Postives = 106/163 (65.03%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYC--DPNYPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C A+ FYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+NRE G +  DYC     +PC    K +GRGPIQ+S+NYNY              NNPDL+A D V+SFK+A+W WMTAQ PKPS H+VI   W P   D
Sbjct:   26 CGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQG-SPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY--GAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVAD 185          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.457e-44
Identity = 88/162 (54.32%), Postives = 104/162 (64.20%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDP-NYPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            C    FYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYCF  E       YC P ++PC    K YGRGPIQL+ NYNY              NNPDLL+T+P +SFK+AIW WMT Q  KPS H+VI   W P A D
Sbjct:  101 CAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQN-TQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAAD 259          
The following BLAST results are available for this feature:
BLAST of CX306023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI3_TOBAC3.524e-4958.90Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIA_SECCE5.088e-4858.28Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU6.645e-4857.6726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE1.480e-4756.44Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI1_ORYSJ1.933e-4754.88Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_HORVU4.307e-4757.6726 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI3_ORYSJ1.253e-4653.37Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ1.253e-4655.83Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC1.061e-4554.60Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIX_PEA4.457e-4454.32Endochitinase OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18013A11Rv Drought1 Citrus clementina cDNA clone C18013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306023 ID=CX306023; Name=CX306023; organism=Citrus clementina; type=EST; length=485bp
GATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCC
AAAGCTTTTCCAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAG
AGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGAT
GGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGG
GAAGTTGGCGTTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCG
AGGGAAGTGCTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATT
ACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAAT
CCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTG
GTCCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTA
TCGACGAATGGAAACCACCAGCAAATGACGTAAAC
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